Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 2.6e-203 711.8 360 100.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 3.4e-179 631.7 360 87.8
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 4.5e-179 631.3 360 87.8
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 9.9e-179 630.2 356 89.0
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.7e-178 629.4 360 88.1
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 4.9e-178 627.9 360 87.5
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 4.9e-178 627.9 360 87.5
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 5.4e-177 624.4 356 87.6
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 4.6e-176 621.3 356 87.9
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 6.0e-176 620.9 360 86.7
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 3.4e-171 605.1 355 86.5
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.6e-171 604.0 343 88.6
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.0e-167 592.0 360 82.8
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 6.1e-152 541.2 361 74.8
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 3.9e-151 538.5 360 73.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 6.7e-151 537.7 360 73.3
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.8e-148 529.6 359 71.3
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.1e-148 528.5 364 72.8
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.6e-147 525.8 360 71.9
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 5.9e-147 524.6 362 72.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.9e-146 522.3 363 69.7
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 6.5e-146 521.2 363 68.9
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 8.5e-146 520.8 362 71.8
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 3.2e-145 518.8 362 68.8
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 7.2e-145 517.7 362 69.9
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 7.2e-145 517.7 362 71.5
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.6e-144 516.5 371 69.5
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.7e-144 515.8 376 68.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.7e-144 515.8 357 72.8
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.1e-144 514.6 361 69.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 7.9e-144 514.2 361 69.3
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.4e-143 513.5 358 70.4
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.8e-143 513.1 360 70.3
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 3.0e-143 512.3 363 70.5
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.9e-143 511.9 361 70.6
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.4e-142 508.4 361 68.7
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 9.7e-142 507.3 384 67.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 9.7e-142 507.3 359 69.4
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.3e-141 506.9 360 68.9
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.7e-141 506.5 381 68.2
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 4.8e-141 505.0 355 69.9
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 6.3e-141 504.6 369 68.8
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 7.0e-140 501.1 366 66.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.2e-139 500.4 333 76.0
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.2e-139 500.4 361 69.5
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 4.5e-139 498.4 360 67.5
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 4.5e-139 498.4 360 67.8
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 7.7e-139 497.7 362 69.1
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.3e-138 496.9 331 75.8
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.9e-137 493.0 362 69.3
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 4.2e-137 491.9 360 68.3
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.2e-137 491.9 356 69.9
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 4.2e-137 491.9 330 73.0
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 5.5e-137 491.5 359 69.4
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.6e-136 490.0 356 69.9
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 4.7e-136 488.4 368 66.8
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 8.0e-136 487.6 364 65.7
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-135 486.5 361 67.0
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 3.9e-135 485.3 356 67.7
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.7e-135 484.6 359 68.8
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 3.3e-134 482.3 362 66.9
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.3e-133 480.3 367 65.7
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.4e-132 476.9 360 67.5
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 5.3e-132 474.9 333 72.1
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 9.1e-132 474.2 362 66.6
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.0e-130 470.7 366 65.0
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 6.5e-130 468.0 412 60.7
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 2.7e-128 462.6 364 63.7
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.7e-128 462.6 363 67.2
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 2.3e-127 459.5 437 58.8
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.2e-126 457.2 359 66.6
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 2.6e-126 456.1 262 88.5
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.7e-125 453.4 364 63.7
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 4.1e-124 448.7 330 66.1
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.5e-123 445.7 282 75.5
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.9e-122 442.6 358 64.0
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.9e-121 439.9 258 86.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 4.7e-120 435.3 355 61.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 8.8e-119 431.0 354 61.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.4e-116 422.9 358 61.5
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 7.0e-116 421.4 301 67.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.2e-115 420.6 332 67.2
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 2.9e-114 416.0 335 64.2
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 8.6e-114 414.5 337 63.2
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 4.7e-112 408.7 350 60.9
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 3.0e-111 406.0 263 74.9
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.5e-110 403.7 356 60.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.0e-106 391.0 264 74.2
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.9e-105 386.7 263 73.8
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 4.3e-105 385.6 262 73.7
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.0e-104 381.3 270 73.3
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 5.2e-103 378.6 265 73.2
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.2e-102 377.5 337 57.3
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.8e-102 374.4 367 55.6
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.4e-100 369.8 332 55.4
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 5.4e-100 368.6 337 57.3
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.7e-99 366.3 271 69.0
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 6.6e-98 361.7 301 60.8
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 3.4e-94 349.4 251 70.5
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.4e-94 349.4 272 61.4
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.2e-91 340.9 256 66.8
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.6e-91 340.5 355 50.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.4e-84 317.4 311 54.0
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 6.0e-83 312.0 207 76.3
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.1e-79 301.2 340 47.9
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.4e-76 290.8 187 77.0
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.4e-76 290.8 344 47.4
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.2e-67 261.2 219 63.9
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.2e-62 244.6 186 65.1
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.7e-56 223.0 438 33.8
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 7.4e-49 198.7 380 34.7
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 9.6e-49 198.4 216 49.1
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 6.9e-47 192.2 144 66.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.5e-38 164.5 148 56.1
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-36 156.8 159 54.7
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.0e-33 147.5 319 31.3
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.4e-31 140.6 149 53.7
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.8e-29 133.3 108 61.1
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.5e-28 129.4 120 50.8
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-27 128.3 138 52.2
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 4.7e-27 126.3 96 62.5
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 8.8e-26 122.1 77 83.1
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 4.8e-24 116.3 81 67.9
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 8.2e-24 115.5 74 73.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 1.8e-23 114.4 299 30.4
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 9.1e-23 112.1 72 72.2
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.8e-18 97.8 96 56.2
CARHR058540 Cardamine hirsuta HOM05D006412 ORTHO05D008025 3.6e-11 73.6 75 54.7
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.1e-07 62.0 89 38.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.9e-06 56.2 174 25.3
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.9e-06 56.2 186 25.3
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 7.7e-06 55.8 165 26.7
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 7.7e-06 55.8 147 26.5


User provided reference genes

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