Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 9.4e-52 206.5 96 100.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.0e-42 176.4 87 89.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.4e-42 176.0 87 89.7
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.2e-41 172.9 87 87.4
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 4.9e-40 167.5 88 86.4
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.1e-39 166.4 88 83.0
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 2.4e-39 165.2 94 83.0
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.4e-39 165.2 88 83.0
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.2e-38 162.9 82 86.6
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.2e-38 162.9 87 81.6
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 3.5e-38 161.4 82 86.6
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.0e-37 159.8 94 79.8
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.9e-37 158.3 91 78.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.9e-36 155.6 88 76.1
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 2.5e-36 155.2 89 76.4
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.3e-36 154.5 88 77.3
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 4.3e-36 154.5 96 72.9
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 9.5e-36 153.3 84 78.6
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 9.5e-36 153.3 96 71.9
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.2e-35 152.9 88 79.5
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.6e-35 152.5 79 83.5
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.8e-35 151.8 89 77.5
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.7e-35 151.0 85 78.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.7e-35 151.0 85 78.8
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.7e-35 151.0 88 78.4
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 4.7e-35 151.0 88 77.3
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 8.0e-35 150.2 85 75.3
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 8.0e-35 150.2 90 77.8
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 8.0e-35 150.2 88 77.3
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.8e-34 149.1 90 76.7
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.8e-34 149.1 89 71.9
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 2.3e-34 148.7 79 83.5
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.3e-34 148.7 80 80.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 3.1e-34 148.3 78 80.8
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 3.1e-34 148.3 79 83.5
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 3.1e-34 148.3 91 76.9
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 3.1e-34 148.3 79 82.3
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 4.0e-34 147.9 78 82.1
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 4.0e-34 147.9 79 79.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 4.0e-34 147.9 79 79.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.2e-34 147.5 84 76.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.2e-34 147.5 80 78.8
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 6.8e-34 147.1 89 71.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.9e-34 146.7 96 69.8
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 8.9e-34 146.7 94 71.3
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 8.9e-34 146.7 79 78.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.2e-33 146.4 84 75.0
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.2e-33 146.4 91 70.3
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.2e-33 146.4 84 76.2
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.2e-33 146.4 79 78.5
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.5e-33 146.0 91 71.4
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.5e-33 146.0 90 73.3
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.0e-33 145.6 77 80.5
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 2.0e-33 145.6 81 77.8
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.6e-33 145.2 88 71.6
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 3.4e-33 144.8 78 80.8
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.4e-33 144.8 90 72.2
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 3.4e-33 144.8 80 76.2
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.4e-33 144.8 79 77.2
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 4.4e-33 144.4 86 76.7
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 4.4e-33 144.4 79 78.5
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 5.8e-33 144.1 90 72.2
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 5.8e-33 144.1 78 80.8
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 7.5e-33 143.7 85 72.9
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 7.5e-33 143.7 77 81.8
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 7.5e-33 143.7 86 76.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.3e-32 142.9 89 73.0
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 1.7e-32 142.5 84 73.8
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.7e-32 142.5 76 80.3
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.7e-32 142.5 75 80.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.2e-32 142.1 80 75.0
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 4.9e-32 141.0 86 73.3
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 6.4e-32 140.6 84 72.6
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 8.3e-32 140.2 91 67.0
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.9e-31 139.0 82 73.2
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.6e-30 136.0 78 74.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 3.9e-29 131.3 82 69.5
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.0e-26 121.3 132 47.7
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 5.2e-26 120.9 139 48.2
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 6.6e-21 104.0 76 60.5
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 3.6e-19 98.2 199 34.7
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 3.6e-19 98.2 85 58.8
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 4.9e-16 87.8 41 90.2
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.4e-15 85.5 43 81.4
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 7.1e-15 84.0 42 81.0
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 2.3e-13 79.0 41 80.5
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 8.6e-13 77.0 42 76.2
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 5.6e-12 74.3 50 66.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 7.3e-12 73.9 63 58.7
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.2e-11 73.2 55 61.8
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.7e-11 71.2 48 64.6
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 3.4e-09 65.1 86 37.2
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 4.4e-09 64.7 79 40.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 5.8e-09 64.3 86 36.0
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.8e-09 64.3 37 73.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.7e-08 62.8 79 38.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.7e-08 62.8 79 38.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 2.2e-08 62.4 79 36.7
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 2.9e-08 62.0 77 36.4
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.9e-08 62.0 79 36.7
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.9e-08 62.0 88 34.1
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 2.9e-08 62.0 79 36.7
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.9e-08 62.0 39 69.2
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.9e-08 62.0 95 32.6
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.8e-08 61.6 79 36.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 4.9e-08 61.2 79 36.7
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 8.4e-08 60.5 32 78.1
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 8.4e-08 60.5 93 32.3
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 8.4e-08 60.5 81 38.3
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.4e-07 59.7 95 33.7
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.4e-07 59.7 77 36.4
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 36.7
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.4e-07 59.7 77 35.1
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.4e-07 59.7 87 35.6
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.9e-07 59.3 83 33.7
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.9e-07 59.3 81 35.8
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.4e-07 58.9 79 35.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.4e-07 58.9 79 35.4
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.4e-07 58.9 86 33.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.4e-07 58.9 79 35.4
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.4e-07 58.9 79 34.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 3.2e-07 58.5 87 32.2
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.2e-07 58.5 86 33.7
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.2e-07 58.5 86 33.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 83 34.9
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 3.2e-07 58.5 83 33.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 35.4
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.2e-07 58.5 83 34.9
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 4.2e-07 58.2 77 35.1
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.2e-07 58.2 79 32.9
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 5.4e-07 57.8 93 31.2
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 5.4e-07 57.8 79 34.2
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 5.4e-07 57.8 79 35.4
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 5.4e-07 57.8 79 35.4
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.4e-07 57.8 83 33.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 5.4e-07 57.8 93 32.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 5.4e-07 57.8 86 32.6
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 7.1e-07 57.4 99 32.3
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 7.1e-07 57.4 79 35.4
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 9.3e-07 57.0 79 34.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 9.3e-07 57.0 85 31.8
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 9.3e-07 57.0 82 34.1
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 9.3e-07 57.0 79 35.4
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 9.3e-07 57.0 79 34.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 2.1e-06 55.8 79 32.9
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.7e-06 55.5 79 32.9
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 2.7e-06 55.5 94 28.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 2.7e-06 55.5 94 28.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.7e-06 55.5 83 33.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 3.5e-06 55.1 90 32.2
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 3.5e-06 55.1 83 32.5
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 4.6e-06 54.7 77 32.5
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 6.0e-06 54.3 79 31.6


User provided reference genes

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