Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 9.1e-257 889.8 469 100.0
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.7e-245 851.7 469 94.9
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 8.0e-245 850.1 469 94.2
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 5.2e-244 847.4 470 95.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 5.2e-244 847.4 470 95.7
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.6e-243 845.1 469 94.0
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.3e-243 844.7 469 94.9
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.7e-242 842.4 469 94.5
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 2.8e-242 841.6 471 95.3
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 5.3e-241 837.4 493 91.1
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 1.5e-238 829.3 469 92.5
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 3.2e-238 828.2 469 92.8
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.5e-238 827.4 469 91.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.7e-237 825.1 469 91.5
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 6.1e-237 823.9 469 92.1
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.8e-236 822.4 469 91.9
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.0e-236 821.6 469 91.9
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.0e-236 821.6 469 91.9
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 6.7e-236 820.5 469 91.9
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.5e-235 819.3 469 91.7
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 4.8e-234 814.3 469 90.8
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 1.7e-231 805.8 497 86.7
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 1.2e-227 793.1 468 86.8
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.7e-226 789.3 469 87.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.8e-225 785.8 469 85.5
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 4.1e-225 784.6 469 86.4
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 5.4e-225 784.3 469 86.6
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 9.1e-225 783.5 469 85.7
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 9.1e-225 783.5 469 86.4
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.0e-224 782.3 469 85.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.7e-224 781.9 469 87.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 7.7e-224 780.4 469 86.1
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 7.7e-224 780.4 469 86.1
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 7.7e-224 780.4 469 86.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 1.3e-223 779.6 469 85.9
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.7e-223 779.2 469 85.9
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 3.8e-223 778.1 469 85.1
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.5e-222 776.2 469 85.5
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.2e-222 774.6 469 84.6
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 4.2e-222 774.6 469 85.1
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 5.5e-222 774.2 469 85.7
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.2e-222 773.9 471 86.0
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.2e-221 773.1 469 85.1
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.1e-221 772.3 469 84.6
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 2.1e-221 772.3 469 85.5
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 6.1e-221 770.8 469 84.6
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.4e-220 769.6 470 84.7
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.2e-220 767.7 469 84.2
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 6.8e-220 767.3 469 85.3
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 6.8e-220 767.3 469 83.8
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 6.8e-220 767.3 469 83.2
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.5e-219 766.1 469 84.0
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 7.5e-219 763.8 469 84.4
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 7.5e-219 763.8 469 83.6
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 9.8e-219 763.5 469 83.4
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.2e-218 762.3 470 83.6
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.8e-218 761.9 468 83.8
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 3.7e-218 761.5 470 83.6
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 3.7e-218 761.5 469 83.6
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 3.7e-218 761.5 470 83.4
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 4.9e-218 761.1 468 82.9
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 8.3e-218 760.4 470 83.2
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.1e-217 760.0 471 83.9
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.1e-217 758.4 469 82.3
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 3.1e-217 758.4 469 83.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 3.1e-217 758.4 470 83.4
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 5.4e-217 757.7 469 83.2
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 83.2
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 5.9e-216 754.2 506 79.2
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 1.3e-215 753.1 468 83.5
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.9e-215 751.9 470 82.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 8.6e-215 750.4 463 83.6
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.1e-214 750.0 506 78.7
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 3.3e-214 748.4 468 82.7
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 8.0e-213 743.8 469 83.6
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 8.0e-213 743.8 493 79.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.4e-212 743.0 469 82.9
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 3.7e-210 734.9 469 81.0
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.2e-209 731.9 545 73.2
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 7.0e-209 730.7 449 84.6
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.2e-208 729.9 469 80.6
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.7e-205 718.0 469 80.0
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.6e-203 712.2 441 83.2
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 3.4e-203 711.8 470 79.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.6e-200 701.4 491 76.2
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 6.6e-199 697.6 470 78.5
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.2e-195 686.8 492 74.4
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.4e-193 679.9 418 84.0
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 4.6e-192 674.9 418 82.5
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 4.6e-192 674.9 418 82.5
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 6.2e-189 664.5 397 87.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.0e-187 659.4 425 81.6
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.9e-186 655.6 468 76.5
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 3.2e-185 652.1 469 71.6
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 2.3e-183 646.0 461 75.3
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.6e-179 632.5 423 78.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 2.9e-178 629.0 383 85.9
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.6e-176 621.7 469 72.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.9e-166 589.7 465 66.9
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 3.8e-162 575.5 374 79.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 6.4e-162 574.7 350 82.6
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 2.7e-160 569.3 340 88.2
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 4.6e-160 568.5 312 94.6
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 3.0e-159 565.8 469 66.5
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 3.9e-159 565.5 373 77.7
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 1.1e-156 557.4 470 60.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 1.5e-155 553.5 365 80.0
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 3.4e-147 525.8 324 85.5
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.5e-130 468.0 282 87.2
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 6.3e-125 451.8 365 66.6
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.2e-123 447.6 324 75.3
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.4e-108 396.7 246 85.0
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 2.0e-86 323.9 312 60.3
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.9e-82 309.7 301 55.8
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 8.6e-82 308.5 249 67.5
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.1e-80 303.9 182 80.2
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.3e-79 300.4 173 85.5
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 3.4e-78 296.6 505 36.6
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 6.4e-77 292.4 160 98.1
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.1e-72 275.4 217 59.4
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.4e-70 270.0 294 53.1
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.5e-67 260.0 407 45.5
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.9e-65 254.2 140 97.9
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.4e-55 221.5 195 66.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.1e-51 207.6 119 92.4
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.1e-51 207.6 338 38.2
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.5e-46 191.4 485 31.5
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.5e-45 186.0 107 82.2
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.7e-43 180.6 111 87.4
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.1e-42 176.4 105 81.0
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 2.8e-40 170.6 111 80.2
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.2e-36 156.8 91 89.0
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.3e-32 145.2 79 96.2
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.4e-30 137.1 76 86.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.1e-28 132.1 72 90.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.5e-28 131.0 72 87.5
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.6e-27 126.7 72 83.3
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 3.0e-26 124.0 74 81.1
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 9.7e-25 119.0 74 78.4
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-23 115.2 79 73.4
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.5e-22 111.7 99 60.6
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.1e-20 105.5 57 86.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.6e-19 101.7 57 82.5
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.5e-17 95.1 52 96.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-13 80.5 47 87.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.5e-12 78.6 54 77.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-12 77.8 46 91.3
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 7.2e-12 76.3 52 80.8
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 5.2e-10 70.1 74 51.4


User provided reference genes

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