Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.5e-90 336.3 183 100.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 9.5e-61 237.3 179 77.7
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 4.0e-59 231.9 178 75.8
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-48 196.1 178 64.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 2.4e-48 196.1 178 64.6
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 9.2e-48 194.1 177 63.8
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 9.2e-48 194.1 178 64.0
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 3.0e-46 189.1 178 60.7
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 3.0e-46 189.1 178 60.7
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-45 186.8 178 60.1
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-45 186.4 178 60.1
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 6.9e-43 177.9 167 60.5
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 6.9e-43 177.9 184 60.3
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 9.0e-43 177.6 166 59.6
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 9.0e-43 177.6 178 67.4
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.8e-42 174.9 176 63.6
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.2e-39 167.2 179 63.1
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 5.1e-38 161.8 176 63.1
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 5.6e-37 158.3 176 55.1
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 5.6e-37 158.3 176 55.1
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 7.3e-37 157.9 176 61.4
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 9.6e-37 157.5 143 60.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 9.6e-37 157.5 176 54.5
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 9.6e-37 157.5 175 58.9
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.1e-36 156.4 176 59.1
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 3.6e-36 155.6 176 54.5
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-35 154.1 176 54.0
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.1e-35 154.1 176 54.0
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 2.4e-35 152.9 176 58.0
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.5e-34 150.2 176 52.3
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 5.8e-34 148.3 176 52.8
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-33 147.1 176 54.5
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.9e-32 143.3 86 77.9
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 4.2e-32 142.1 177 55.9
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 4.2e-32 142.1 177 55.9
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 9.3e-32 141.0 175 48.6
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 8.7e-30 134.4 180 50.6
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.1e-29 134.0 181 50.3
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 9.6e-29 131.0 177 47.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 2.8e-28 129.4 127 57.5
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 8.1e-28 127.9 177 46.3
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-27 125.9 136 53.7
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 5.3e-27 125.2 179 47.5
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 5.3e-27 125.2 177 46.3
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 6.9e-27 124.8 175 45.7
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 9.0e-27 124.4 143 51.0
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.8e-25 119.0 177 44.6
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 5.5e-24 115.2 178 44.9
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 4.6e-23 112.1 181 52.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 4.6e-23 112.1 177 43.5
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 6.0e-23 111.7 179 46.4
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 7.9e-23 111.3 177 42.4
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.3e-22 110.5 161 42.2
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 3.0e-22 109.4 135 54.1
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 8.7e-22 107.8 175 43.4
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.1e-21 107.5 188 41.5
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.5e-21 106.3 137 46.7
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 2.5e-21 106.3 175 46.3
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.5e-21 106.3 176 41.5
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 3.3e-21 105.9 177 43.5
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 4.3e-21 105.5 125 56.8
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.3e-21 105.5 173 50.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.3e-21 105.5 177 41.2
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.3e-21 105.5 175 46.3
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-20 103.2 147 51.0
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 2.1e-20 103.2 132 55.3
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.1e-20 103.2 179 41.3
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.8e-20 102.8 141 44.7
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 4.8e-20 102.1 129 55.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.8e-20 102.1 172 43.0
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 6.2e-20 101.7 176 44.9
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 6.2e-20 101.7 180 41.1
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 6.2e-20 101.7 134 44.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.1e-19 100.9 136 43.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.4e-19 100.5 180 47.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.4e-19 100.5 140 46.4
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.4e-19 99.8 178 37.6
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.4e-19 99.8 178 37.6
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.4e-19 99.8 182 47.3
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.1e-19 99.4 185 45.4
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.1e-19 99.4 185 45.4
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 3.1e-19 99.4 190 39.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 4.0e-19 99.0 176 41.5
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 5.3e-19 98.6 171 40.4
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 5.3e-19 98.6 147 51.0
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 5.3e-19 98.6 178 48.9
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 6.9e-19 98.2 176 48.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 6.9e-19 98.2 181 42.5
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 9.0e-19 97.8 134 46.3
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 9.0e-19 97.8 177 40.7
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 9.0e-19 97.8 182 42.3
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.2e-18 97.4 178 43.3
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.2e-18 97.4 173 49.1
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.5e-18 97.1 180 43.9
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.5e-18 97.1 180 43.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.0e-18 96.7 180 43.9
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 2.0e-18 96.7 140 45.0
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.6e-18 96.3 134 46.3
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.6e-18 96.3 185 44.3
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.4e-18 95.9 172 49.4
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 7.6e-18 94.7 186 39.8
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 7.6e-18 94.7 134 47.8
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-17 94.4 149 47.7
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.2e-17 93.2 176 41.5
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.9e-17 92.8 156 41.7
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.5e-17 91.7 138 44.2
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.5e-17 91.7 177 39.0
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.1e-16 90.9 179 45.3
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.9e-16 90.1 181 49.7
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.9e-16 90.1 139 43.9
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.5e-16 89.7 181 47.0
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 3.2e-16 89.4 177 47.5
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.2e-16 89.4 140 44.3
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.2e-16 89.0 159 40.3
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 5.5e-16 88.6 90 68.9
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 7.1e-16 88.2 177 46.9
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 7.1e-16 88.2 176 39.8
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.2e-15 87.4 131 42.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.6e-15 87.0 186 41.4
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.1e-15 86.7 182 50.0
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-15 86.7 182 50.0
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 2.1e-15 86.7 138 46.4
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.1e-15 86.7 175 37.7
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 3.5e-15 85.9 146 45.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.0e-15 85.1 182 50.0
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.0e-14 84.3 140 42.1
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.0e-14 84.3 158 40.5
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 2.3e-14 83.2 96 55.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.3e-14 83.2 176 36.9
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.0e-14 82.8 193 46.6
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 3.9e-14 82.4 150 43.3
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 3.9e-14 82.4 132 41.7
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 5.1e-14 82.0 136 44.1
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.1e-13 80.9 174 44.8
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.1e-13 80.9 173 44.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 1.5e-13 80.5 178 36.5
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.9e-13 80.1 130 38.5
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.9e-13 80.1 131 43.5
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 3.3e-13 79.3 150 41.3
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.3e-13 79.3 193 43.0
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.3e-13 79.0 182 40.7
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 7.4e-13 78.2 141 42.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 9.7e-13 77.8 174 39.7
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.3e-12 77.4 176 37.5
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.6e-12 77.0 177 39.0
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 3.7e-12 75.9 141 39.0
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 3.1e-11 72.8 132 38.6
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 6.9e-11 71.6 46 78.3
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.2e-10 70.9 133 40.6
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.5e-10 68.9 138 39.9
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.9e-10 68.6 178 34.3
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.0e-09 67.8 176 36.4
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.2e-09 66.6 181 38.1
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 6.5e-09 65.1 137 38.0
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.4e-08 63.9 167 36.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.4e-08 63.9 140 36.4
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.2e-08 62.8 136 34.6
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 5.5e-08 62.0 106 36.8
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 9.4e-08 61.2 137 37.2
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 4.6e-07 58.9 173 34.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 4.6e-07 58.9 103 40.8
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 7.9e-07 58.2 138 31.9
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.0e-06 56.2 115 40.0
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 3.0e-06 56.2 81 49.4
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 3.0e-06 56.2 141 36.2
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 3.9e-06 55.8 77 51.9
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 6.7e-06 55.1 48 54.2


User provided reference genes

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