Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 2342.8 1210 100.0
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1857.4 1239 78.7
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1852.0 1241 78.2
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1807.3 1235 76.5
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1800.4 1223 77.4
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1798.1 1221 77.1
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1779.2 1211 76.7
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1705.3 1237 73.2
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1685.6 1237 72.6
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1664.4 1233 72.2
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1639.8 1243 69.5
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1616.3 1238 70.9
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1611.7 1190 72.5
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1605.5 1211 71.3
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1525.0 1034 76.4
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1297.3 1267 55.2
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1291.6 1266 55.2
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1268.4 1235 54.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1252.7 1263 54.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1248.8 1266 53.5
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1248.4 1254 54.1
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1227.6 1251 53.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1223.8 1265 52.6
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1219.1 1259 52.2
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1218.0 1251 52.7
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1213.7 1261 53.1
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1212.6 1251 52.7
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1209.9 1255 52.7
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1204.1 1264 52.4
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1196.4 1268 51.7
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1193.7 1247 52.4
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1192.2 1248 53.3
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1188.7 1266 51.9
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1182.5 1249 52.0
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1178.3 1247 51.8
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1167.9 1280 50.5
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1167.5 1269 51.1
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1162.9 1264 50.3
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1159.4 845 74.2
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1156.0 1260 51.3
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1155.2 1268 50.9
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1150.6 1240 49.8
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1147.1 1253 49.9
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1146.7 1267 50.0
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1146.3 1259 50.0
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1144.4 1067 56.8
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1144.4 1256 50.6
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1143.6 1249 49.9
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1139.4 1275 49.8
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1139.4 1254 49.5
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1135.2 1264 49.8
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1119.0 1212 50.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1116.3 1255 48.6
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1109.0 1252 49.0
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1107.4 1254 49.8
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1104.0 1253 48.8
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1104.0 1269 48.4
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1101.7 1251 48.7
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1095.9 1174 52.0
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1093.6 1252 48.5
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1091.6 1253 48.8
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1087.4 1238 48.1
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1085.5 1249 48.8
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1083.9 1260 47.5
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1079.3 1243 49.6
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1077.0 1255 47.3
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 8.3e-312 1073.9 1249 48.1
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 1.1e-309 1067.0 1249 48.1
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 5.3e-309 1064.7 1247 47.1
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 3.2e-306 1055.4 1243 47.9
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 1.4e-304 1050.0 1247 47.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 3.7e-302 1042.0 1201 49.8
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 1.1e-301 1040.4 1248 46.1
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 4.1e-301 1038.5 1163 50.9
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 1.1e-298 1030.4 1250 47.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 2.7e-297 1025.8 1285 46.1
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 3.3e-295 1018.8 1266 45.8
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.7e-295 1018.1 1242 45.9
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 1.7e-294 1016.5 1283 45.2
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 2.2e-294 1016.1 1233 46.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 4.8e-294 1015.0 1247 45.5
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 5.3e-293 1011.5 1239 46.3
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 7.2e-290 1001.1 843 62.4
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 7.2e-290 1001.1 1231 46.5
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 6.7e-288 994.6 1289 45.3
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 1.5e-287 993.4 1241 45.3
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 9.7e-287 990.7 1246 46.6
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 2.2e-283 979.5 1173 48.4
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 3.8e-283 978.8 960 54.6
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 6.1e-281 971.5 1014 52.4
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 5.2e-280 968.4 925 57.3
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.0e-267 927.5 1260 43.0
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.9e-226 790.4 976 45.2
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.7e-214 750.7 1251 37.1
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 5.3e-208 729.2 982 44.2
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.4e-205 721.1 1210 37.4
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 8.2e-193 678.7 897 43.8
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.7e-190 671.0 937 42.5
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.1e-189 668.3 1221 34.9
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.5e-159 567.0 856 38.6
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 5.7e-154 549.7 865 38.2
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.1e-152 545.4 773 41.4
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.1e-152 545.4 571 51.7
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 2.7e-151 540.8 771 39.7
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 1.8e-139 501.5 766 39.0
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.4e-136 491.1 427 60.2
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.4e-120 438.7 631 40.7
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.4e-106 391.0 548 40.5
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.3e-101 374.4 362 55.5
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 6.4e-97 360.1 350 56.6
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 2.4e-96 358.2 339 57.8
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 7.9e-95 353.2 339 57.5
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 2.1e-87 328.6 236 68.2
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.1e-84 318.5 460 41.1
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 8.2e-84 316.6 385 45.2
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 5.3e-75 287.3 654 31.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 4.6e-71 274.2 481 33.3
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.3e-60 239.6 492 32.5
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 4.2e-56 224.6 372 38.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 8.2e-52 210.3 396 31.8
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-51 209.1 336 33.9
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.2e-46 191.0 291 37.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.1e-35 156.8 275 36.4
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 5.9e-34 151.0 164 50.6
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 9.2e-27 127.1 320 32.8
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 5.4e-19 101.3 436 25.0
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.0e-18 97.8 128 38.3
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.7e-17 96.3 203 32.5
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 4.7e-15 88.2 125 39.2
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 8.9e-14 84.0 104 42.3
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.5e-13 83.2 104 41.3
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-12 79.3 104 40.4
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 2.5e-08 65.9 61 49.2


User provided reference genes

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