Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.5e-76 288.9 168 100.0
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.3e-53 212.6 166 79.5
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 3.0e-53 212.2 165 78.2
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 5.1e-53 211.5 165 78.8
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.0e-52 209.5 165 78.2
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-51 206.8 165 77.0
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-51 206.8 165 77.0
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-51 206.8 165 77.0
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.3e-51 206.8 165 77.0
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.2e-51 206.1 165 77.0
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 2.8e-51 205.7 165 78.2
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 6.3e-51 204.5 165 75.8
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 1.4e-50 203.4 165 75.2
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.0e-49 199.5 166 69.9
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.0e-48 197.2 165 70.3
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.5e-47 192.6 166 67.5
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.5e-47 192.6 165 72.1
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 6.3e-43 177.9 165 69.1
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 8.2e-43 177.6 165 66.1
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.2e-41 173.7 161 67.1
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.2e-41 173.7 165 68.5
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.6e-41 173.3 162 71.6
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 4.5e-41 171.8 165 69.1
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 7.7e-41 171.0 166 65.1
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 5.0e-40 168.3 163 68.1
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 5.0e-40 168.3 163 68.1
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 4.2e-39 165.2 172 65.1
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 5.5e-39 164.9 168 66.1
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 7.2e-39 164.5 164 67.1
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.6e-38 163.3 176 61.4
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.6e-38 163.3 165 67.9
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.0e-37 160.6 163 53.4
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.8e-37 159.8 168 66.1
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.8e-37 159.8 152 71.1
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.3e-37 159.5 163 60.7
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.0e-37 158.7 153 70.6
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 6.7e-37 157.9 168 64.9
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.1e-36 157.1 153 69.9
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.5e-36 156.8 153 69.9
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 2.6e-36 156.0 167 62.9
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 3.3e-36 155.6 163 66.9
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 7.5e-36 154.5 104 75.0
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.7e-35 153.3 156 67.3
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.2e-35 152.9 166 61.4
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.2e-35 152.9 166 61.4
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.8e-35 152.5 167 62.3
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 4.8e-35 151.8 104 73.1
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 4.8e-35 151.8 169 64.5
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 6.3e-35 151.4 165 62.4
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.1e-34 150.6 104 73.1
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 1.1e-34 150.6 167 60.5
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.4e-34 149.4 104 72.1
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.4e-34 149.4 154 63.6
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 4.1e-34 148.7 164 61.0
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 5.3e-34 148.3 163 51.5
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 7.0e-34 147.9 169 48.5
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 1.2e-33 147.1 164 60.4
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.5e-33 145.2 165 64.2
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.7e-32 143.3 163 62.6
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 2.2e-32 142.9 166 55.4
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 3.8e-32 142.1 163 60.7
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 5.0e-32 141.7 163 57.1
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 6.5e-32 141.4 156 61.5
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.1e-31 140.6 163 61.3
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.5e-31 140.2 155 60.6
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.9e-31 139.8 159 56.0
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.9e-31 139.8 167 61.1
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 5.5e-31 138.3 160 56.2
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.5e-31 138.3 165 63.6
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 5.5e-31 138.3 164 61.0
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.2e-30 137.1 165 62.4
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 2.1e-30 136.3 166 62.0
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 2.1e-30 136.3 171 58.5
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.6e-30 135.6 176 57.4
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 6.1e-30 134.8 161 60.2
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.0e-29 134.0 165 62.4
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 1.0e-29 134.0 163 60.1
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 1.0e-29 134.0 177 55.9
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.0e-29 134.0 167 58.1
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.4e-29 133.7 180 44.4
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.3e-29 132.9 121 78.5
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 4.0e-29 132.1 172 58.1
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 5.2e-29 131.7 165 59.4
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 8.8e-29 131.0 161 59.6
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 1.2e-28 130.6 170 57.1
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 1.2e-28 130.6 166 59.0
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 1.2e-28 130.6 156 61.5
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 2.0e-28 129.8 165 57.0
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 2.6e-28 129.4 169 45.0
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 4.4e-28 128.6 158 60.1
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 4.4e-28 128.6 164 56.7
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 5.7e-28 128.3 157 61.8
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 5.7e-28 128.3 181 55.2
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 5.7e-28 128.3 164 50.6
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 9.8e-28 127.5 176 47.2
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 9.8e-28 127.5 176 47.2
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.3e-27 127.1 161 56.5
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 8.3e-27 124.4 165 58.2
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.4e-26 123.6 166 54.8
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.4e-26 123.6 163 57.1
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.8e-26 123.2 167 55.7
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 4.1e-26 122.1 163 55.8
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 5.4e-26 121.7 163 55.2
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 5.4e-26 121.7 164 56.7
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 9.1e-26 120.9 173 55.5
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 9.1e-26 120.9 149 60.4
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 9.1e-26 120.9 149 60.4
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 9.1e-26 120.9 149 60.4
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 9.1e-26 120.9 163 58.3
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.2e-25 120.6 115 71.3
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 2.0e-25 119.8 164 55.5
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 2.0e-25 119.8 163 54.6
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 7.7e-25 117.9 175 54.9
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 7.7e-25 117.9 163 57.7
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.2e-24 116.3 167 49.1
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 3.8e-24 115.5 147 59.2
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 6.5e-24 114.8 170 54.1
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 6.5e-24 114.8 92 85.9
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 6.5e-24 114.8 167 56.9
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 1.1e-23 114.0 163 55.2
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.5e-23 113.6 183 47.5
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.5e-23 113.6 163 55.2
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.5e-23 112.8 150 57.3
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.2e-23 112.1 160 50.6
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 4.2e-23 112.1 160 47.5
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 7.2e-23 111.3 165 50.9
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 7.2e-23 111.3 172 50.6
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 7.2e-23 111.3 166 50.6
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 9.4e-23 110.9 165 51.5
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 9.4e-23 110.9 183 45.9
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.2e-22 110.5 177 48.6
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.2e-22 110.5 177 48.6
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 1.2e-22 110.5 161 52.8
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.6e-22 110.2 158 53.8
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.7e-22 109.4 178 51.1
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 3.6e-22 109.0 177 48.0
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 3.6e-22 109.0 177 48.0
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.7e-22 108.6 167 49.7
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 4.7e-22 108.6 159 55.3
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 6.1e-22 108.2 166 49.4
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 6.1e-22 108.2 157 55.4
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 1.0e-21 107.5 161 52.8
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.4e-21 107.1 176 47.2
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.4e-21 107.1 176 47.2
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.4e-21 107.1 162 53.7
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 3.0e-21 105.9 165 51.5
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.0e-21 105.5 166 49.4
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 4.0e-21 105.5 147 55.8
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 6.8e-21 104.8 162 50.6
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.0e-20 103.2 164 50.0
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.0e-20 103.2 156 51.9
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.6e-20 102.8 165 50.9
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.6e-20 102.8 173 50.3
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.4e-20 102.4 163 50.3
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 5.7e-20 101.7 157 52.9
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 7.5e-20 101.3 169 47.9
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 9.8e-20 100.9 164 50.6
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 9.8e-20 100.9 162 52.5
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 9.8e-20 100.9 182 47.8
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.2e-19 99.8 172 48.3
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 4.9e-19 98.6 150 54.0
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 8.3e-19 97.8 164 48.2
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 4.1e-18 95.5 158 51.9
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 5.4e-18 95.1 158 48.1
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 7.0e-18 94.7 156 49.4
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.2e-17 94.0 145 44.8
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 2.0e-17 93.2 154 51.9
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 5.9e-17 91.7 156 48.7
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 5.9e-17 91.7 151 51.7
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 7.7e-17 91.3 168 47.6
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 7.7e-17 91.3 159 44.7
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 5.0e-16 88.6 147 51.7
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 5.0e-16 88.6 159 49.7
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 1.9e-15 86.7 159 43.4
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 4.3e-15 85.5 163 42.3
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 4.3e-15 85.5 163 42.3
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 4.3e-15 85.5 163 42.3
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 3.6e-14 82.4 162 42.6
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 4.7e-14 82.0 109 47.7
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 2.3e-13 79.7 157 46.5
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 3.4e-12 75.9 95 63.2
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.7e-11 72.4 82 50.0
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.4e-10 70.5 103 58.3
BraA07t29361Z Brassica rapa HOM05D003453 ORTHO05D042392 9.2e-10 67.8 65 52.3
Peaxi162Scf00117g00118 Petunia axillaris HOM05D002488 ORTHO05D002613 2.3e-08 63.2 99 51.5
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 7.3e-07 58.2 79 63.3


User provided reference genes

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