Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.3e-164 580.5 293 100.0
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 6.5e-104 381.3 302 72.2
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 8.5e-104 380.9 296 70.9
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.7e-99 366.7 301 70.4
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.1e-98 364.0 302 70.2
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 4.1e-98 362.1 302 68.2
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 3.8e-96 355.5 302 68.5
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 5.5e-95 351.7 305 66.2
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.9e-93 344.4 302 65.6
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.9e-93 344.4 302 65.6
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-89 334.0 293 64.8
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.9e-88 329.3 307 65.1
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.5e-84 317.0 294 62.9
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-82 309.7 296 62.5
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 6.0e-81 305.1 300 65.0
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.1e-77 294.3 303 58.7
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 3.1e-77 292.7 303 58.7
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.8e-77 291.6 305 58.0
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.0e-76 290.0 305 58.0
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 5.8e-76 288.5 305 58.0
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 5.8e-76 288.5 305 58.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 8.3e-75 284.6 284 59.2
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.4e-74 283.9 305 60.0
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.4e-74 283.9 283 58.3
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.9e-74 283.5 290 56.9
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 4.1e-74 282.3 258 62.8
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.2e-73 280.8 301 56.8
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.6e-73 280.4 301 58.5
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.6e-73 280.4 291 57.0
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 2.7e-73 279.6 297 56.9
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 3.5e-73 279.3 308 57.1
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.6e-73 278.9 301 60.1
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 7.8e-73 278.1 311 57.6
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.3e-72 277.3 282 59.2
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.7e-72 276.9 299 59.2
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.3e-72 276.6 276 58.7
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 3.9e-72 275.8 282 57.8
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 5.1e-72 275.4 305 55.1
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 8.6e-72 274.6 296 55.7
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 4.3e-71 272.3 303 58.1
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 7.3e-71 271.6 294 56.1
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-70 270.4 310 57.7
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.8e-70 269.6 310 55.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 6.2e-70 268.5 302 55.6
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 8.1e-70 268.1 285 56.8
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.8e-69 266.9 300 55.0
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 3.1e-69 266.2 257 58.4
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 6.8e-69 265.0 300 58.0
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 6.8e-69 265.0 269 58.7
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.2e-68 264.2 302 54.6
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.6e-68 263.1 295 54.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.4e-68 262.7 295 54.9
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 5.8e-68 261.9 305 53.1
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 7.5e-68 261.5 305 51.8
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.2e-67 260.0 296 55.4
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.9e-67 259.6 289 54.3
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 6.4e-67 258.5 303 54.5
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 8.3e-67 258.1 289 55.0
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.4e-66 256.5 302 53.0
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.2e-65 254.2 306 50.7
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-65 254.2 268 53.7
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.6e-65 253.8 322 52.2
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.5e-65 252.7 272 54.4
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 7.8e-65 251.5 304 52.3
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 7.8e-65 251.5 304 52.3
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 7.8e-65 251.5 304 51.0
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.1e-63 247.7 279 52.3
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.1e-63 247.7 285 54.4
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.5e-63 247.3 266 55.3
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.9e-63 246.9 266 54.5
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.9e-63 246.9 312 48.7
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 3.3e-63 246.1 295 51.2
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.3e-63 245.0 303 50.2
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 7.3e-63 245.0 293 49.8
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.2e-62 244.2 293 51.2
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.4e-61 240.7 266 53.4
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 5.2e-61 238.8 275 53.1
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 6.8e-61 238.4 296 51.7
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 2.6e-60 236.5 270 53.0
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.6e-60 236.5 309 48.5
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.4e-60 236.1 304 50.0
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 7.6e-60 235.0 311 50.2
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 9.9e-60 234.6 299 50.8
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.7e-59 233.8 299 51.2
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 2.2e-59 233.4 253 57.7
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 2.2e-59 233.4 401 43.1
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.9e-59 232.3 292 48.6
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 4.9e-59 232.3 313 48.9
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 4.9e-59 232.3 290 50.7
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 6.4e-59 231.9 261 57.1
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 8.4e-59 231.5 286 48.3
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.4e-58 229.9 293 48.1
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.2e-58 229.2 307 49.2
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 7.1e-58 228.4 310 46.8
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 7.1e-58 228.4 311 48.6
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.6e-57 227.3 264 54.9
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 2.1e-57 226.9 282 50.0
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.7e-57 226.5 309 50.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.7e-57 226.5 297 52.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 7.8e-57 224.9 292 50.0
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.9e-56 222.6 304 48.0
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.5e-55 220.7 301 49.8
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.1e-54 216.9 299 47.8
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 4.8e-54 215.7 318 46.9
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.5e-52 210.7 188 69.1
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.6e-52 209.9 277 51.3
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 4.4e-52 209.1 239 51.5
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 5.8e-52 208.8 309 49.5
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 1.4e-50 204.1 313 44.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.1e-49 200.3 265 47.5
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.3e-48 197.6 310 45.8
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.6e-48 195.3 285 40.7
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.3e-47 193.0 282 44.3
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 8.1e-46 188.3 290 44.8
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.8e-45 187.2 290 41.7
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 9.9e-44 181.4 197 56.3
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 9.9e-44 181.4 301 43.2
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 3.5e-41 172.9 264 46.6
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 6.7e-40 168.7 254 42.9
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 9.6e-39 164.9 246 43.1
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 4.8e-38 162.5 294 37.4
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.1e-37 161.4 267 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.8e-37 160.6 294 37.8
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.4e-37 160.2 231 48.5
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.0e-36 157.1 268 39.6
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 7.6e-36 155.2 238 45.8
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.0e-35 154.8 169 54.4
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.7e-35 154.1 270 43.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.2e-34 149.4 302 38.1
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 3.5e-33 146.4 158 55.7
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 6.7e-32 142.1 196 46.4
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 8.7e-32 141.7 111 68.5
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 6.9e-29 132.1 271 38.4
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 9.0e-29 131.7 228 38.6
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.5e-26 123.6 281 34.9
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 3.7e-22 109.8 123 54.5
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-18 98.2 70 75.7
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 9.4e-18 95.1 99 56.6
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-15 88.2 102 51.0
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.9e-11 73.6 92 44.6
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 5.0e-11 72.8 86 46.5
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.7e-09 67.0 123 34.1
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 4.7e-09 66.2 120 37.5
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.3e-08 63.9 60 56.7
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 4.8e-06 56.2 81 40.7


User provided reference genes

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