Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G20160 Aethionema arabicum HOM05D000086 ORTHO05D001065 3.3e-73 278.5 162 100.0
THA.LOC104803928 Tarenaya hassleriana HOM05D001172 ORTHO05D001065 7.0e-23 111.3 127 54.3
AT2G18670 Arabidopsis thaliana HOM05D000086 ORTHO05D001065 1.5e-20 103.6 131 54.2
Cpa.g.sc75.12 Carica papaya HOM05D000086 ORTHO05D001065 2.3e-18 96.3 129 47.3
Aa31LG8G15400 Aethionema arabicum HOM05D000086 ORTHO05D001065 5.2e-18 95.1 112 57.1
AT4G30370 Arabidopsis thaliana HOM05D000086 ORTHO05D001065 8.8e-18 94.4 135 45.9
AL3G52060 Arabidopsis lyrata HOM05D000086 ORTHO05D001065 1.2e-17 94.0 131 52.7
Carub.0007s1023 Capsella rubella HOM05D000086 ORTHO05D001065 1.5e-17 93.6 135 46.7
CARHR238270 Cardamine hirsuta HOM05D001172 ORTHO05D001065 5.7e-17 91.7 137 46.0
AL7G21780 Arabidopsis lyrata HOM05D000086 ORTHO05D001065 9.8e-17 90.9 130 50.0
RcHm_v2.0_Chr4g0404731 Rosa chinensis HOM05D000086 ORTHO05D001065 2.4e-15 86.3 103 45.6
Ciclev10009692m.g Citrus clementina HOM05D001172 ORTHO05D001065 5.4e-15 85.1 108 46.3
Manes.06G025800 Manihot esculenta HOM05D001172 ORTHO05D001065 7.0e-15 84.7 101 42.6
Sed0002466 Sechium edule HOM05D001172 ORTHO05D001065 7.0e-15 84.7 105 46.7
C01p08680 Brassica napus HOM05D001172 ORTHO05D001065 1.0e-13 80.9 100 50.0
Glyma.17G068200 Glycine max HOM05D000086 ORTHO05D001065 2.9e-13 79.3 105 41.9
Sp3g32160 Schrenkiella parvula HOM05D000086 ORTHO05D001065 5.0e-13 78.6 130 45.4
Carub.0003s3293 Capsella rubella HOM05D000086 ORTHO05D001065 6.5e-13 78.2 132 45.5
CiPaw.08G039600 Carya illinoinensis HOM05D000086 ORTHO05D001065 6.5e-13 78.2 106 41.5
CARHR109260 Cardamine hirsuta HOM05D000086 ORTHO05D001065 1.5e-12 77.0 122 50.0
Thhalv10026407m.g Eutrema salsugineum HOM05D000086 ORTHO05D001065 3.2e-12 75.9 134 41.8
TWI34G0281 Tripterygium wilfordii HOM05D001172 ORTHO05D001065 7.2e-12 74.7 100 47.0
BcaB03g16661 Brassica carinata HOM05D000086 ORTHO05D001065 9.5e-12 74.3 76 57.9
Medtr4g129335 Medicago truncatula HOM05D000086 ORTHO05D001065 9.5e-12 74.3 106 37.7
Medtr4g129370 Medicago truncatula HOM05D000086 ORTHO05D001065 9.5e-12 74.3 106 37.7
BcaB03g12644 Brassica carinata HOM05D000086 ORTHO05D001065 1.6e-11 73.6 112 49.1
Prupe.1G096100 Prunus persica HOM05D000086 ORTHO05D001065 2.1e-11 73.2 110 40.0
Sed0016546 Sechium edule HOM05D000086 ORTHO05D001065 2.1e-11 73.2 104 40.4
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 4.7e-11 72.0 76 52.6
BolC7t40797H Brassica oleracea HOM05D000086 ORTHO05D001065 4.7e-11 72.0 76 52.6
Lj4g0023804 Lotus japonicus HOM05D001172 ORTHO05D001065 6.1e-11 71.6 105 41.9
FAN22G0291 Fragaria x ananassa HOM05D000086 ORTHO05D001065 1.4e-10 70.5 102 40.2
TWI32G0455 Tripterygium wilfordii HOM05D001172 ORTHO05D001065 1.8e-10 70.1 100 42.0
BcaC01g01156 Brassica carinata HOM05D001172 ORTHO05D001065 2.3e-10 69.7 111 48.6
BolC9t55985H Brassica oleracea HOM05D000086 ORTHO05D001065 2.3e-10 69.7 96 46.9
FAN01G0738 Fragaria x ananassa HOM05D000086 ORTHO05D001065 2.3e-10 69.7 100 40.0
FAN17G0574 Fragaria x ananassa HOM05D000086 ORTHO05D001065 2.3e-10 69.7 100 40.0
A08p19270 Brassica napus HOM05D001172 ORTHO05D001065 3.0e-10 69.3 102 49.0
Thhalv10022879m.g Eutrema salsugineum HOM05D000086 ORTHO05D001065 3.0e-10 69.3 47 70.2
Lalb_Chr12g0199111 Lupinus albus HOM05D001172 ORTHO05D001065 5.2e-10 68.6 100 37.0
CANSAT11G1973 Cannabis sativa HOM05D000086 ORTHO05D001065 6.8e-10 68.2 97 44.3
BolC3t21185H Brassica oleracea HOM05D001172 ORTHO05D001065 8.8e-10 67.8 111 47.7
CiPaw.07G187000 Carya illinoinensis HOM05D000086 ORTHO05D001065 8.8e-10 67.8 110 42.7
Glyma.13G092100 Glycine max HOM05D000086 ORTHO05D001065 8.8e-10 67.8 99 39.4
MD16G1263200 Malus domestica HOM05D000086 ORTHO05D001065 8.8e-10 67.8 112 36.6
Sp7g28240 Schrenkiella parvula HOM05D001172 ORTHO05D001065 8.8e-10 67.8 112 47.3
BraA08t33888Z Brassica rapa HOM05D001172 ORTHO05D001065 1.2e-09 67.4 102 47.1
VMungo1215G1764 Vigna mungo HOM05D001172 ORTHO05D001065 1.5e-09 67.0 97 38.1
Phvul.003G150700 Phaseolus vulgaris HOM05D000086 ORTHO05D001065 2.0e-09 66.6 98 37.8
FvH4_4g08660 Fragaria vesca HOM05D000086 ORTHO05D001065 2.6e-09 66.2 100 39.0
FAN07G1060 Fragaria x ananassa HOM05D000086 ORTHO05D001065 2.6e-09 66.2 97 41.2
Sabra06G0134400 Salix brachista HOM05D001172 ORTHO05D001065 5.7e-09 65.1 88 42.0
BcaC04g21480 Brassica carinata HOM05D000086 ORTHO05D001065 9.8e-09 64.3 73 52.1
C09p31290 Brassica napus HOM05D000086 ORTHO05D001065 9.8e-09 64.3 73 52.1
Haze_22157 Corylus avellana HOM05D000015 ORTHO05D001065 1.7e-08 63.5 108 38.0
Haze_22158 Corylus avellana HOM05D000086 ORTHO05D001065 1.7e-08 63.5 108 38.0
TAR383G0136 Trochodendron aralioides HOM05D000086 ORTHO05D001065 2.2e-08 63.2 133 36.1
BcaC09g51825 Brassica carinata HOM05D001172 ORTHO05D001065 3.7e-08 62.4 102 46.1
BolC1t00852H Brassica oleracea HOM05D001172 ORTHO05D001065 3.7e-08 62.4 102 46.1
A07p01910 Brassica napus HOM05D004960 ORTHO05D001065 4.9e-08 62.0 97 47.4
BcaNung02994 Brassica carinata HOM05D001172 ORTHO05D001065 6.3e-08 61.6 46 56.5
A01p07790 Brassica napus HOM05D001172 ORTHO05D001065 6.3e-08 61.6 102 46.1
BraA01t00723Z Brassica rapa HOM05D001172 ORTHO05D001065 6.3e-08 61.6 102 46.1
ClCG11G012570 Citrullus lanatus HOM05D037433 ORTHO05D001065 6.3e-08 61.6 78 43.6
Gohir.D08G255600 Gossypium hirsutum HOM05D001172 ORTHO05D001065 6.3e-08 61.6 47 55.3
Gorai.004G272900 Gossypium raimondii HOM05D001172 ORTHO05D001065 6.3e-08 61.6 47 55.3
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 1.1e-07 60.8 102 38.2
MBI14_g08071_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D001065 1.1e-07 60.8 104 36.5
Lalb_Chr07g0180121 Lupinus albus HOM05D001172 ORTHO05D001065 1.8e-07 60.1 92 41.3
Cfa013542 Carpinus fangiana HOM05D000086 ORTHO05D001065 4.1e-07 58.9 108 38.0
Gohir.A08G235200 Gossypium hirsutum HOM05D001172 ORTHO05D001065 4.1e-07 58.9 47 53.2
Thecc.09G162200 Theobroma cacao HOM05D001172 ORTHO05D001065 4.1e-07 58.9 119 38.7
TPR.G5297 Trifolium pratense HOM05D000086 ORTHO05D001065 4.1e-07 58.9 101 36.6
MELO3C004093.2 Cucumis melo HOM05D037433 ORTHO05D001065 5.4e-07 58.5 83 43.4
Dinv43328 Davidia involucrata HOM05D000086 ORTHO05D001065 7.0e-07 58.2 102 37.3
C09p13350 Brassica napus HOM05D037951 ORTHO05D001065 1.6e-06 57.0 59 47.5
Nn8g40258 Nelumbo nucifera HOM05D000086 ORTHO05D001065 3.5e-06 55.8 110 33.6
HanXRQChr09g0244321 Helianthus annuus HOM05D000086 ORTHO05D001065 5.9e-06 55.1 104 33.7
HPP92_025616 Vanilla planifolia HOM05D000086 ORTHO05D001065 5.9e-06 55.1 109 36.7
A09p11330 Brassica napus HOM05D000086 ORTHO05D001065 7.7e-06 54.7 45 55.6
BolC9t54227H Brassica oleracea HOM05D000086 ORTHO05D001065 7.7e-06 54.7 45 55.6
BraA09t36771Z Brassica rapa HOM05D000086 ORTHO05D001065 7.7e-06 54.7 45 55.6
Sabra18G0084700 Salix brachista HOM05D001172 ORTHO05D001065 7.7e-06 54.7 88 36.4


User provided reference genes

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