Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 7.0e-170 600.5 299 100.0
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 3.9e-128 461.8 298 80.5
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 7.1e-122 441.0 300 77.3
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 6.2e-118 427.9 300 73.3
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 4.0e-117 425.2 298 74.5
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 1.3e-115 420.2 297 74.1
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 7.1e-114 414.5 299 73.2
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 1.6e-113 413.3 299 72.9
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 1.6e-113 413.3 299 72.9
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 1.6e-113 413.3 299 72.9
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 1.8e-112 409.8 306 71.6
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 2.4e-106 389.4 292 70.5
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 5.1e-104 381.7 306 69.0
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 1.0e-91 340.9 302 63.9
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 1.9e-90 336.7 302 61.9
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 2.5e-87 326.2 302 60.6
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 2.5e-87 326.2 304 59.9
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 9.7e-87 324.3 298 61.1
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 1.7e-86 323.6 296 60.5
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 3.7e-86 322.4 305 60.0
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 4.8e-86 322.0 229 71.6
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 6.3e-86 321.6 304 59.5
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 1.4e-85 320.5 294 60.9
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.4e-85 320.5 305 59.0
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 1.4e-85 320.5 303 59.4
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 1.8e-85 320.1 301 59.1
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 3.1e-85 319.3 301 59.1
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.1e-85 318.9 300 59.7
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.1e-85 318.9 304 60.5
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 6.9e-85 318.2 295 61.0
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.5e-84 317.0 308 59.1
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 3.4e-84 315.8 199 75.4
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 7.7e-84 314.7 299 59.9
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 1.0e-83 314.3 313 58.8
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 1.0e-83 314.3 309 57.3
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 1.3e-83 313.9 290 59.3
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 6.5e-83 311.6 302 57.9
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.4e-82 310.5 301 56.8
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.4e-82 310.5 303 57.1
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.9e-82 310.1 301 57.1
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 3.2e-82 309.3 306 57.8
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 4.2e-82 308.9 308 56.5
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 2.7e-81 306.2 305 56.1
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 3.6e-81 305.8 304 57.9
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 3.6e-81 305.8 302 57.9
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 4.7e-81 305.4 304 57.9
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 6.1e-81 305.1 297 56.6
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 3.0e-80 302.8 320 54.4
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 5.1e-80 302.0 293 56.3
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 5.1e-80 302.0 309 54.0
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 8.8e-80 301.2 306 55.9
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 1.5e-79 300.4 307 55.7
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 2.0e-79 300.1 341 52.8
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 2.6e-79 299.7 271 60.1
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 2.6e-79 299.7 295 59.0
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 4.4e-79 298.9 300 55.7
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 4.4e-79 298.9 307 57.0
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 4.4e-79 298.9 295 59.0
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 1.3e-78 297.4 299 57.2
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 1.3e-78 297.4 302 57.3
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 1.3e-78 297.4 315 54.6
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 2.2e-78 296.6 182 76.4
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 6.3e-78 295.0 311 53.7
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 6.3e-78 295.0 288 55.2
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 1.1e-77 294.3 200 71.0
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 2.4e-77 293.1 310 55.8
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 2.4e-77 293.1 193 74.6
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.2e-76 290.8 302 55.0
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 2.9e-75 286.2 208 68.3
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 1.4e-74 283.9 303 54.1
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 3.2e-74 282.7 254 61.4
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 3.2e-74 282.7 224 65.2
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 9.4e-74 281.2 248 59.3
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 3.6e-73 279.3 214 64.5
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 1.0e-72 277.7 166 78.3
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 1.0e-72 277.7 165 78.8
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 3.0e-72 276.2 299 54.8
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 5.7e-71 271.9 156 80.1
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 5.7e-71 271.9 256 57.8
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 7.4e-71 271.6 258 58.1
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 7.4e-71 271.6 268 53.4
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 9.7e-71 271.2 161 80.1
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 2.4e-69 266.5 156 79.5
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.0e-67 261.2 225 59.6
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 3.8e-67 259.2 298 51.7
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 8.5e-67 258.1 166 72.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.6e-65 253.8 171 72.5
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.0e-64 249.2 304 50.7
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 9.7e-63 244.6 148 78.4
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 1.4e-61 240.7 296 50.3
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 6.5e-59 231.9 166 67.5
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 1.0e-56 224.6 196 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 1.4e-53 214.2 201 53.2
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 6.6e-51 205.3 236 54.2
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 8.6e-51 204.9 202 50.0
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 3.3e-50 203.0 209 49.8
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 1.6e-49 200.7 209 49.3
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 1.3e-46 191.0 260 46.9
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 6.3e-46 188.7 310 43.9
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 1.2e-44 184.5 184 53.3
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 2.7e-44 183.3 246 48.8
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 1.9e-42 177.2 188 53.7
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 1.6e-41 174.1 199 44.7
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.4e-40 171.0 102 77.5
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 7.5e-39 165.2 112 69.6
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 2.0e-36 157.1 102 72.5
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 2.0e-36 157.1 256 42.2
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 3.5e-36 156.4 98 72.4
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 4.6e-36 156.0 212 44.8
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 8.9e-32 141.7 351 33.6
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 3.4e-31 139.8 167 44.3
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 2.2e-30 137.1 183 41.5
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 2.9e-14 83.6 122 47.5
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 5.8e-07 59.3 59 47.5


User provided reference genes

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