Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.4e-26 122.5 74 100.0
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 79.7
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 85.1
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.6e-19 99.0 74 81.1
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.1e-19 98.6 73 83.6
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.8e-19 98.2 74 83.8
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 4.8e-19 97.4 74 78.4
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 6.2e-19 97.1 74 77.0
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 8.1e-19 96.7 74 79.7
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.1e-18 96.3 73 76.7
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.1e-18 96.3 74 79.7
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.4e-18 95.9 74 79.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 4.0e-18 94.4 73 71.2
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 77.0
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 75.7
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 6.9e-18 93.6 71 76.1
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 70.3
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 70.3
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 9.0e-18 93.2 71 74.6
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 9.0e-18 93.2 71 74.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 9.0e-18 93.2 68 83.8
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.2e-17 92.8 74 83.8
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.2e-17 92.8 74 75.7
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 1.2e-17 92.8 74 71.6
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.2e-17 92.8 74 74.3
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 2.0e-17 92.0 75 80.0
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 2.0e-17 92.0 75 80.0
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 2.0e-17 92.0 75 80.0
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 2.0e-17 92.0 75 80.0
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.0e-17 92.0 74 79.7
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.0e-17 92.0 74 71.6
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 2.6e-17 91.7 71 73.2
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 2.6e-17 91.7 69 76.8
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 2.6e-17 91.7 74 75.7
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 3.4e-17 91.3 74 70.3
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 73.0
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 75.7
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 5.8e-17 90.5 74 75.7
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 5.8e-17 90.5 71 74.6
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 5.8e-17 90.5 72 75.0
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.8e-17 90.5 75 80.0
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 5.8e-17 90.5 74 74.3
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 75.7
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 9.9e-17 89.7 72 76.4
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.9e-17 89.7 72 76.4
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 75.0
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 75.0
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 75.0
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 75.0
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.3e-16 89.4 73 64.4
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 74.3
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 74.3
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.2e-16 88.6 74 75.7
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.2e-16 88.6 72 73.6
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 66.2
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.8e-16 87.8 75 80.0
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.8e-16 87.8 74 63.5
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 4.9e-16 87.4 71 77.5
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.9e-16 87.4 71 73.2
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 6.4e-16 87.0 72 75.0
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 6.4e-16 87.0 74 64.9
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 8.4e-16 86.7 71 70.4
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 75.7
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.4e-15 85.9 74 73.0
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.4e-15 85.9 71 71.8
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.9e-15 85.5 74 73.0
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.9e-15 85.5 72 75.0
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 1.9e-15 85.5 74 64.9
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.9e-15 85.5 74 74.3
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.9e-15 85.5 74 74.3
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.4e-15 85.1 74 75.7
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 2.4e-15 85.1 74 75.7
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.4e-15 85.1 74 75.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 71 70.4
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 2.4e-15 85.1 71 70.4
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 2.4e-15 85.1 71 59.2
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.2e-15 84.7 74 74.3
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 3.2e-15 84.7 71 74.6
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 4.2e-15 84.3 71 76.1
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 5.4e-15 84.0 66 77.3
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 5.4e-15 84.0 74 74.3
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 5.4e-15 84.0 74 74.3
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 7.1e-15 83.6 68 70.6
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 9.3e-15 83.2 74 67.6
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 68.1
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.2e-14 82.8 71 63.4
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.6e-14 82.4 74 75.7
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.1e-14 82.0 74 73.0
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 3.5e-14 81.3 74 73.0
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 3.5e-14 81.3 74 73.0
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 6.0e-14 80.5 72 70.8
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 7.9e-14 80.1 77 67.5
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 7.9e-14 80.1 74 70.3
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 7.9e-14 80.1 68 79.4
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 7.9e-14 80.1 73 72.6
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.0e-13 79.7 74 62.2
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.3e-13 79.3 74 75.7
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.3e-13 79.3 71 73.2
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.3e-13 79.3 75 70.7
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.3e-13 79.3 69 72.5
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.3e-13 79.3 71 64.8
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.3e-13 79.3 69 72.5
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.8e-13 79.0 77 77.9
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 2.3e-13 78.6 75 73.3
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 2.3e-13 78.6 72 72.2
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 3.0e-13 78.2 74 68.9
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.9e-13 77.8 70 71.4
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 5.1e-13 77.4 77 76.6
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.1e-13 77.4 71 69.0
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 5.1e-13 77.4 71 69.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 5.1e-13 77.4 82 67.1
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 6.7e-13 77.0 76 61.8
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 72 69.4
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 72 69.4
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 72 69.4
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-13 77.0 72 69.4
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 6.7e-13 77.0 73 65.8
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 8.7e-13 76.6 76 71.1
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 8.7e-13 76.6 73 63.0
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 1.5e-12 75.9 71 70.4
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.5e-12 75.1 71 69.0
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 5.6e-12 73.9 71 71.8
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 5.6e-12 73.9 74 64.9
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 9.6e-12 73.2 72 66.7
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.6e-12 73.2 72 66.7
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.3e-11 72.8 73 69.9
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 2.1e-11 72.0 116 54.3
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 4.8e-11 70.9 68 64.7
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 6.2e-11 70.5 93 62.4
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 6.2e-11 70.5 73 68.5
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.4e-10 69.3 47 76.6
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.8e-10 68.9 65 72.3
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 4.0e-10 67.8 75 54.7
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 4.0e-10 67.8 74 68.9
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 5.3e-10 67.4 68 57.4
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 6.9e-10 67.0 48 70.8
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 6.9e-10 67.0 45 75.6
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 1.2e-09 66.2 46 73.9
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 1.2e-09 66.2 62 69.4
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.5e-09 65.9 74 64.9
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 1.5e-09 65.9 71 69.0
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 1.5e-09 65.9 77 62.3
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.5e-09 65.9 75 64.0
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 1.5e-09 65.9 72 59.7
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 1.5e-09 65.9 74 64.9
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 2.6e-09 65.1 64 59.4
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.0e-08 63.2 45 71.1
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 1.3e-08 62.8 74 63.5
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.2e-08 62.0 75 61.3
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.9e-08 61.6 116 47.4
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 8.4e-08 60.1 66 63.6
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 8.4e-08 60.1 69 63.8
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.4e-07 59.3 66 65.2
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 1.9e-07 58.9 127 41.7
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.9e-07 58.9 63 65.1
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.5e-07 58.5 80 48.8
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 2.5e-07 58.5 70 60.0
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 3.2e-07 58.2 66 63.6
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 5.5e-07 57.4 66 63.6
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 5.5e-07 57.4 66 63.6
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 7.1e-07 57.0 114 44.7
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.2e-06 56.2 72 59.7
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 2.1e-06 55.5 67 53.7
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.7e-06 55.1 125 42.4
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.5e-06 54.7 72 59.7
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 6.0e-06 53.9 70 60.0


User provided reference genes

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