Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 3.5e-166 590.1 815 100.0
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 1.8e-98 365.2 822 85.5
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 6.8e-93 346.7 820 84.8
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 8.0e-86 323.2 819 83.9
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 8.0e-86 323.2 819 83.9
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 6.8e-85 320.1 820 83.7
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 4.4e-84 317.4 820 83.2
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 4.4e-84 317.4 823 83.4
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 8.3e-83 313.2 820 80.1
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.2e-81 309.3 822 82.8
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 6.6e-80 303.5 823 82.7
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 6.2e-78 297.0 792 85.5
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 4.0e-77 294.3 822 81.9
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.4e-74 283.9 819 81.4
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.4e-66 258.5 821 77.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 1.6e-65 255.8 823 80.0
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 7.3e-63 246.9 819 79.5
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.3e-59 236.1 153 71.2
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 6.2e-54 217.2 231 55.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 2.2e-51 208.8 234 53.8
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.6e-49 202.6 822 77.6
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 3.5e-49 201.4 232 51.3
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.3e-48 199.5 225 52.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.3e-48 199.5 226 50.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 3.0e-48 198.4 226 50.0
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 3.0e-48 198.4 230 51.7
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 3.9e-48 198.0 218 53.2
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 5.1e-48 197.6 231 51.5
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 6.7e-48 197.2 230 49.6
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.9e-47 195.7 227 49.8
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.5e-47 195.3 238 49.6
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 3.3e-47 194.9 229 47.6
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.3e-46 193.0 232 47.0
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 2.1e-46 192.2 228 49.6
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.8e-46 191.8 226 49.6
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.1e-45 189.9 227 48.9
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-45 189.1 147 61.9
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.4e-45 188.7 228 50.0
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.1e-45 188.3 224 47.8
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 3.1e-45 188.3 221 48.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 4.0e-45 188.0 176 55.1
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 4.0e-45 188.0 195 52.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.2e-44 186.4 227 47.6
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.0e-44 185.7 147 60.5
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 2.6e-44 185.3 147 59.9
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 3.4e-44 184.9 229 46.7
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 7.6e-44 183.7 216 49.5
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.0e-43 183.3 185 53.0
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.3e-43 183.0 163 58.3
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 2.2e-43 182.2 146 61.6
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-43 181.8 228 46.9
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.9e-43 181.8 227 46.7
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.9e-43 181.8 226 46.5
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 4.9e-43 181.0 235 46.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 8.4e-43 180.3 239 43.1
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 8.4e-43 180.3 147 62.6
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.1e-42 179.9 147 57.8
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.1e-42 179.9 239 44.8
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.9e-42 179.1 147 59.2
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.5e-42 178.7 219 47.9
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.2e-42 177.9 147 57.1
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.5e-42 177.6 147 59.9
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 7.1e-42 177.2 147 61.2
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 7.1e-42 177.2 147 57.1
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 9.3e-42 176.8 207 48.3
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.7e-41 175.3 159 56.6
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 2.7e-41 175.3 168 54.2
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.5e-41 174.9 241 45.2
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.5e-41 174.9 147 56.5
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 4.6e-41 174.5 156 54.5
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 7.9e-41 173.7 178 49.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.0e-40 173.3 144 59.0
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.8e-40 172.6 180 51.7
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.8e-40 172.6 174 51.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.8e-40 172.6 147 57.1
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 6.7e-40 170.6 147 57.1
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 6.7e-40 170.6 232 47.4
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.7e-40 170.2 130 63.8
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.7e-40 170.2 130 63.8
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 8.7e-40 170.2 141 58.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.5e-39 169.5 166 54.2
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.9e-39 169.1 237 42.6
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-39 169.1 160 56.9
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-39 168.7 147 57.1
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 3.3e-39 168.3 147 56.5
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 7.4e-39 167.2 236 44.1
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 7.4e-39 167.2 147 56.5
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 7.4e-39 167.2 147 56.5
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.3e-38 166.4 138 58.7
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-38 166.0 184 51.1
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 6.2e-38 164.1 150 55.3
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.2e-38 163.7 164 54.9
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.1e-37 163.3 166 54.2
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.4e-37 162.9 176 51.1
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.4e-37 162.2 138 56.5
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 2.0e-36 159.1 218 44.5
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 4.5e-36 157.9 189 47.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 4.5e-36 157.9 152 55.3
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.3e-35 156.4 201 47.3
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 4.2e-34 151.4 139 56.8
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.3e-34 150.2 172 51.7
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.2e-33 149.8 152 48.7
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 7.9e-33 147.1 157 49.0
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 7.9e-33 147.1 158 57.6
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-32 146.7 111 63.1
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.3e-32 145.6 154 48.7
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.0e-32 145.2 154 49.4
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.9e-32 144.8 150 55.3
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 3.9e-32 144.8 152 48.0
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 5.1e-32 144.4 154 48.1
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 2.8e-30 138.7 101 69.3
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 6.3e-30 137.5 133 52.6
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.2e-30 137.1 180 47.2
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 5.3e-29 134.4 101 65.3
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.6e-28 132.1 101 61.4
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.7e-28 130.6 96 65.6
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.2e-27 129.0 220 38.2
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.9e-27 128.6 132 53.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.9e-27 128.6 125 52.8
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.1e-26 126.7 88 69.3
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 6.1e-25 120.9 149 39.6
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.1e-25 120.9 150 40.7
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 8.2e-22 110.5 134 48.5
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 1.4e-21 109.8 144 39.6
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.5e-20 104.8 107 55.1
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 6.5e-19 100.9 124 46.0
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 8.5e-19 100.5 175 38.9
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.4e-18 99.8 129 41.9
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.2e-18 98.6 116 41.4
Migut.G00038 Erythranthe guttata HOM05D007409 ORTHO05D009264 3.7e-06 58.5 141 27.7
Migut.O00586 Erythranthe guttata HOM05D007409 ORTHO05D009264 8.2e-06 57.4 166 25.9


User provided reference genes

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