Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.9e-47 192.2 99 100.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 6.4e-27 124.0 91 67.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.1e-26 123.2 87 67.8
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-26 122.5 91 68.1
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.8e-26 122.5 91 64.8
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-26 122.1 91 69.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.4e-26 122.1 91 65.9
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.2e-26 121.7 91 65.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 4.1e-26 121.3 91 65.9
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.1e-26 121.3 91 65.9
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.1e-26 121.3 91 67.0
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 5.4e-26 120.9 91 64.8
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.6e-25 119.4 91 65.9
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.0e-25 119.0 91 65.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.7e-25 118.6 91 64.8
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 7.8e-25 117.1 92 67.4
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.0e-24 115.2 95 64.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.9e-24 114.8 92 67.4
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.5e-23 110.2 92 63.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.6e-22 109.4 94 62.8
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.6e-22 109.4 93 63.4
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 8.0e-22 107.1 84 63.1
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 4.9e-19 97.8 59 76.3
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.9e-19 97.8 59 76.3
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.1e-18 94.7 94 53.2
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.7e-17 92.0 59 72.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.5e-17 91.7 59 69.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.0e-17 90.9 86 58.1
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.3e-16 89.0 93 49.5
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.1e-15 86.7 96 51.0
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-15 86.7 103 49.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.9e-15 85.9 94 50.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.5e-15 85.5 94 52.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.3e-15 84.7 78 55.1
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 9.5e-15 83.6 93 49.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.6e-14 82.8 88 53.4
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.1e-14 82.4 94 48.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.6e-14 81.6 83 55.4
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 4.7e-14 81.3 96 45.8
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 8.1e-14 80.5 89 46.1
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 8.1e-14 80.5 94 46.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.4e-13 79.7 83 54.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.8e-13 79.3 89 48.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.8e-13 79.3 94 47.9
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.3e-13 79.0 72 56.9
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 2.3e-13 79.0 93 46.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.1e-13 78.6 83 53.0
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 4.0e-13 78.2 81 54.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.0e-13 78.2 80 53.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.2e-13 77.8 93 48.4
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.8e-13 77.4 95 47.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 6.8e-13 77.4 91 48.4
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.2e-12 76.6 84 50.0
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.0e-12 75.9 91 45.1
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.6e-12 75.5 95 46.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.4e-12 75.1 89 44.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.4e-12 75.1 93 47.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 4.4e-12 74.7 84 50.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.4e-12 74.7 73 52.1
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 4.4e-12 74.7 73 52.1
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 5.8e-12 74.3 80 47.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.8e-12 74.3 95 46.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 5.8e-12 74.3 80 46.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.8e-12 74.3 95 45.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.5e-12 73.9 84 47.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.5e-12 73.9 89 46.1
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 7.5e-12 73.9 82 45.1
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.9e-12 73.6 96 46.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 9.9e-12 73.6 86 51.2
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 9.9e-12 73.6 95 47.4
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.3e-11 73.2 96 45.8
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.3e-11 73.2 85 47.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-11 73.2 86 46.5
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-11 72.8 90 44.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-11 72.8 90 44.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.7e-11 72.8 95 45.3
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.7e-11 72.8 86 47.7
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.7e-11 72.8 84 47.6
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.7e-11 72.8 80 51.2
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.7e-11 72.8 93 45.2
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.2e-11 72.4 62 58.1
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.9e-11 72.0 89 43.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.9e-11 72.0 96 41.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.9e-11 72.0 84 47.6
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.9e-11 72.0 89 47.2
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.9e-11 72.0 84 47.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 3.7e-11 71.6 82 46.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.7e-11 71.6 84 48.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.7e-11 71.6 84 47.6
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.7e-11 71.6 84 47.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.9e-11 71.2 95 45.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.4e-11 70.9 84 47.6
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 6.4e-11 70.9 95 45.3
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.3e-11 70.5 94 46.8
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 8.3e-11 70.5 84 46.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 8.3e-11 70.5 87 46.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 8.3e-11 70.5 91 40.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 8.3e-11 70.5 102 48.0
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.1e-10 70.1 95 44.2
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-10 70.1 84 44.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.4e-10 69.7 95 43.2
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.4e-10 69.7 77 45.5
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.9e-10 69.3 90 43.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.9e-10 69.3 84 47.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.4e-10 68.9 89 48.3
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.4e-10 68.9 82 50.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.2e-10 68.6 84 45.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 4.1e-10 68.2 93 40.9
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.4e-10 67.8 72 50.0
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 7.1e-10 67.4 81 42.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 7.1e-10 67.4 94 38.3
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 9.2e-10 67.0 93 41.9
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.1e-09 65.9 64 50.0
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.1e-09 65.9 76 47.4
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.0e-09 64.3 78 42.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 7.8e-09 63.9 84 42.9
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-08 63.2 86 39.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.3e-08 63.2 84 46.4
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.7e-08 62.8 82 42.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.7e-08 62.8 93 41.9
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 5.1e-08 61.2 85 41.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.5e-07 59.7 79 38.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.5e-07 59.7 52 59.6
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.5e-07 58.9 32 78.1
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.1e-06 55.8 36 63.9
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-06 55.5 36 66.7
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.8e-06 55.5 78 43.6
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.8e-06 55.5 40 62.5
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 4.7e-06 54.7 41 56.1
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 6.2e-06 54.3 79 36.7


User provided reference genes

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