Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 1.7e-96 355.9 174 100.0
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 5.4e-90 334.3 174 91.4
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 1.2e-89 333.2 174 91.4
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 4.0e-85 318.2 174 86.8
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 6.9e-85 317.4 174 87.4
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 2.0e-84 315.8 174 88.5
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 2.2e-83 312.4 176 86.9
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 1.1e-82 310.1 174 86.2
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 3.2e-82 308.5 176 85.8
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 7.1e-82 307.4 176 84.7
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 1.2e-81 306.6 176 86.4
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 3.9e-80 301.6 162 88.3
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 1.1e-79 300.1 162 87.0
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.3e-78 296.6 171 82.5
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 2.1e-78 295.8 174 82.8
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 2.8e-78 295.4 174 81.6
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 2.8e-78 295.4 174 81.6
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 3.7e-78 295.0 171 82.5
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.4e-77 293.1 171 82.5
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 1.4e-77 293.1 174 81.0
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.8e-77 292.7 171 82.5
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 4.0e-77 291.6 171 80.7
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 6.9e-77 290.8 170 82.4
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 6.9e-77 290.8 170 82.4
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 6.9e-77 290.8 171 81.9
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 6.9e-77 290.8 174 81.0
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 2.0e-76 289.3 171 80.7
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 2.0e-76 289.3 169 82.2
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 2.6e-76 288.9 170 81.8
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 1.3e-75 286.6 171 81.3
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 2.9e-75 285.4 171 79.5
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 3.8e-75 285.0 175 80.0
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 4.9e-75 284.6 171 80.1
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 6.5e-75 284.3 171 80.7
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 8.4e-75 283.9 174 79.3
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 1.4e-74 283.1 174 79.3
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 1.9e-74 282.7 171 80.1
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 2.5e-74 282.3 170 79.4
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.2e-74 282.0 175 79.4
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 5.5e-74 281.2 169 81.1
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 5.5e-74 281.2 168 81.0
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 5.5e-74 281.2 174 79.3
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 1.6e-73 279.6 170 80.6
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 2.1e-73 279.3 170 80.6
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 2.1e-73 279.3 171 77.8
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 2.7e-73 278.9 174 77.0
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 4.6e-73 278.1 171 77.8
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 7.9e-73 277.3 172 80.2
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 1.0e-72 276.9 170 78.8
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 1.0e-72 276.9 174 75.9
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 2.3e-72 275.8 174 75.9
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 3.0e-72 275.4 171 76.6
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 6.7e-72 274.2 171 78.4
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 6.7e-72 274.2 172 77.9
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 1.5e-71 273.1 168 77.4
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 1.9e-71 272.7 170 79.4
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 2.5e-71 272.3 168 78.0
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 2.5e-71 272.3 170 77.6
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 2.5e-71 272.3 179 76.0
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 4.3e-71 271.6 175 77.1
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 2.8e-70 268.9 168 78.0
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 2.8e-70 268.9 171 74.9
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 3.7e-70 268.5 157 82.2
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 4.8e-70 268.1 153 82.4
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 6.3e-70 267.7 169 76.9
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 6.3e-70 267.7 169 76.9
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 6.3e-70 267.7 155 81.3
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 6.3e-70 267.7 169 78.7
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 8.2e-70 267.3 170 77.1
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 8.2e-70 267.3 169 76.9
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 1.1e-69 266.9 169 76.3
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.4e-69 266.5 168 76.2
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 1.4e-69 266.5 171 74.9
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 4.1e-69 265.0 160 78.1
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 9.0e-69 263.8 169 75.7
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 9.0e-69 263.8 168 76.8
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 9.0e-69 263.8 169 76.3
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 2.6e-68 262.3 168 76.8
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 2.9e-67 258.8 169 75.1
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 8.5e-67 257.3 169 73.4
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 1.1e-66 256.9 168 75.0
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.1e-66 256.9 169 74.6
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 1.4e-66 256.5 167 74.9
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 4.2e-66 255.0 171 74.9
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 4.2e-66 255.0 155 78.1
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 7.2e-66 254.2 162 75.3
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 1.2e-65 253.4 171 73.7
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 1.6e-65 253.1 188 67.6
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 2.1e-65 252.7 168 73.2
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 2.1e-65 252.7 168 75.0
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 6.1e-65 251.1 154 77.9
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.0e-64 250.4 160 75.0
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 1.3e-64 250.0 174 70.7
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 2.3e-64 249.2 160 74.4
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 2.3e-64 249.2 169 72.2
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 3.9e-64 248.4 173 72.3
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 6.7e-64 247.7 154 77.3
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 8.7e-64 247.3 153 77.1
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.1e-63 246.9 173 68.2
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.9e-63 246.1 160 73.8
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 1.7e-62 243.0 169 69.8
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 1.1e-61 240.4 139 79.9
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 1.1e-61 240.4 139 79.9
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.8e-61 239.6 165 70.9
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 5.3e-61 238.0 156 75.0
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 6.5e-59 231.1 187 62.6
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 2.7e-57 225.7 170 69.4
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 2.0e-55 219.5 150 68.0
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 5.7e-55 218.0 129 81.4
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 9.7e-55 217.2 157 67.5
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 9.7e-55 217.2 142 75.4
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 4.8e-54 214.9 151 67.5
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.4e-53 213.4 177 61.6
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 2.0e-52 209.5 317 42.0
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 5.9e-52 208.0 134 75.4
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 7.7e-52 207.6 155 61.9
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 4.2e-50 201.8 141 69.5
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 2.4e-45 186.0 110 78.2
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 1.0e-40 170.6 176 54.5
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 1.5e-39 166.8 309 37.2
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 3.1e-37 159.1 224 44.6
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 1.2e-33 147.1 206 43.7
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 5.9e-28 128.3 84 75.0
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 6.1e-25 118.2 67 80.6
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 6.1e-25 118.2 80 70.0
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 4.0e-24 115.5 67 79.1
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 8.3e-22 107.8 79 62.0
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 8.9e-16 87.8 44 81.8
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.0e-11 74.3 88 45.5
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 1.1e-10 70.9 81 51.9
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 2.8e-09 66.2 110 37.3
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 5.2e-08 62.0 118 35.6
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 7.5e-07 58.2 39 66.7
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 6.4e-06 55.1 47 61.7


User provided reference genes

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