Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 4.8e-171 604.4 299 100.0
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.3e-144 516.5 291 86.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 6.2e-142 507.7 291 85.9
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.1e-141 506.9 291 85.9
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 3.1e-141 505.4 291 85.6
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 4.0e-141 505.0 291 85.2
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 5.2e-141 504.6 297 84.5
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.2e-140 503.4 291 85.2
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.5e-140 503.1 291 85.6
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.3e-139 500.0 291 84.9
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 3.2e-138 495.4 292 84.2
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 3.3e-135 485.3 307 80.5
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.4e-132 475.3 291 79.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.7e-131 473.0 290 80.7
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 9.6e-119 430.6 292 73.6
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.3e-118 430.3 291 71.5
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.4e-117 426.8 295 71.2
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 6.9e-117 424.5 288 72.2
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.2e-116 423.7 291 70.1
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.2e-116 423.7 291 70.1
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.6e-116 422.5 287 72.8
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.6e-116 422.5 285 73.7
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.6e-116 422.5 286 71.7
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 3.4e-116 422.2 287 72.5
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.5e-116 421.8 299 70.2
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 4.5e-116 421.8 299 70.2
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 5.8e-116 421.4 286 72.4
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 5.8e-116 421.4 291 69.8
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 7.6e-116 421.0 287 72.8
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 9.9e-116 420.6 287 72.8
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.7e-115 419.9 290 69.7
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.7e-115 419.9 291 71.1
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.2e-115 419.5 291 70.4
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.9e-115 419.1 288 69.4
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 3.8e-115 418.7 286 69.9
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 3.8e-115 418.7 288 72.6
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 3.8e-115 418.7 288 72.9
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.9e-115 418.3 288 72.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 4.9e-115 418.3 286 71.7
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 4.9e-115 418.3 287 72.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.9e-115 418.3 289 71.3
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 6.4e-115 417.9 291 69.8
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.1e-114 417.2 286 69.6
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.4e-114 416.8 291 70.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 3.2e-114 415.6 297 67.7
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.2e-114 415.6 288 69.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 4.2e-114 415.2 287 71.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 4.2e-114 415.2 301 68.1
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.2e-114 415.2 286 70.3
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 9.3e-114 414.1 287 71.4
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-113 413.3 291 68.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.6e-113 413.3 288 69.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 2.1e-113 412.9 287 70.4
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 2.1e-113 412.9 288 70.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.5e-113 412.1 287 69.3
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 4.6e-113 411.8 292 70.5
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.6e-113 411.8 291 69.8
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 6.0e-113 411.4 291 69.4
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 6.0e-113 411.4 285 69.5
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.9e-113 411.0 291 70.1
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.8e-112 409.8 290 69.3
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.3e-112 409.5 291 68.7
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.0e-112 409.1 291 69.1
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.0e-112 409.1 291 69.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.0e-112 409.1 286 71.3
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.9e-112 408.7 291 68.0
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 6.7e-112 407.9 291 68.0
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.1e-111 407.1 286 69.2
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.5e-111 406.8 288 68.1
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.9e-111 406.4 291 69.8
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 2.5e-111 406.0 286 69.2
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.5e-111 406.0 324 62.0
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 3.3e-111 405.6 286 70.6
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 5.6e-111 404.8 286 68.2
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.6e-110 403.3 286 67.8
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.1e-109 400.6 282 68.4
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-109 399.4 291 68.4
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 3.1e-109 399.1 323 63.8
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 4.0e-109 398.7 282 68.8
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 6.9e-109 397.9 286 68.9
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.2e-108 397.1 284 68.7
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.2e-107 392.9 286 67.8
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.9e-107 392.5 286 66.8
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.9e-107 392.5 301 66.1
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.9e-107 391.7 291 67.0
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 8.4e-107 391.0 282 68.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 3.9e-104 382.1 286 66.8
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 8.7e-104 380.9 254 73.6
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 8.7e-104 380.9 254 74.8
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.6e-103 378.3 291 64.3
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.6e-102 376.7 292 63.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.8e-102 375.2 255 71.8
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.2e-102 374.4 324 60.2
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 8.2e-102 374.4 324 60.2
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 6.9e-101 371.3 288 64.2
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.6e-100 369.4 254 71.3
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 7.6e-100 367.9 286 65.7
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.9e-99 365.2 288 63.5
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 8.4e-99 364.4 239 73.6
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.9e-98 363.2 278 64.0
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.9e-98 363.2 286 64.0
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 5.5e-98 361.7 278 63.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 9.3e-98 360.9 256 69.5
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.2e-97 360.5 254 68.1
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 4.6e-97 358.6 288 61.5
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-96 356.7 291 61.5
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.3e-94 350.5 278 64.4
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 6.3e-94 348.2 294 61.9
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.5e-90 335.1 227 72.2
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.3e-86 323.9 286 60.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.8e-85 320.1 241 66.0
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 5.3e-85 318.5 293 56.3
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 4.5e-84 315.5 280 57.5
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.0e-80 304.3 285 54.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 2.3e-80 303.1 280 53.2
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 3.9e-80 302.4 292 54.5
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.1e-79 300.8 208 71.2
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 4.5e-76 288.9 303 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 3.8e-75 285.8 245 58.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 5.0e-75 285.4 289 52.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.8e-70 269.6 228 62.3
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.4e-61 240.7 192 64.1
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 7.0e-61 238.4 169 66.3
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.0e-48 198.0 263 43.0
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 2.2e-46 190.3 130 66.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.0e-44 183.7 273 39.6
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 3.5e-44 183.0 150 64.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.9e-42 177.2 153 62.1
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 1.2e-41 174.5 150 62.7
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 3.7e-38 162.9 138 63.0
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 4.6e-36 156.0 98 80.6
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 8.6e-35 151.8 152 55.9
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 3.1e-32 143.3 113 58.4
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.4e-29 133.7 267 31.8
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 8.6e-27 125.2 379 29.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 5.6e-26 122.5 82 69.5
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 4.9e-22 109.4 171 39.8
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.9e-21 107.5 99 52.5
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.4e-21 107.1 74 67.6
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.2e-17 94.7 88 58.0
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-17 93.6 92 51.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 1.1e-16 91.7 92 51.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 6.8e-16 89.0 66 59.1
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.0e-15 87.4 60 66.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 4.4e-15 86.3 88 52.3
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 4.4e-15 86.3 88 52.3
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 4.4e-15 86.3 109 45.9
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.9e-14 83.6 190 31.6
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 6.4e-14 82.4 214 31.8
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.2e-13 78.6 68 55.9
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.2e-13 78.6 71 53.5
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.7e-12 77.0 56 64.3
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 8.7e-11 72.0 46 67.4
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-10 71.2 46 67.4
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.5e-10 71.2 46 67.4
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 5.6e-10 69.3 144 33.3
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 7.3e-10 68.9 46 63.0
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 9.6e-10 68.6 129 38.0
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.1e-08 63.5 42 66.7
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 1.2e-07 61.6 47 61.7
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 3.4e-07 60.1 47 59.6
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 1.3e-06 58.2 44 61.4


User provided reference genes

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