Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G16190 Aethionema arabicum HOM05D004348 ORTHO05D006191 4.9e-34 147.1 69 100.0
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 8.9e-20 99.8 50 94.0
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 4.9e-18 94.0 50 90.0
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 7.1e-17 90.1 50 88.0
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 7.8e-16 86.7 50 82.0
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 1.3e-15 85.9 50 82.0
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 1.3e-15 85.9 50 82.0
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 1.3e-15 85.9 50 82.0
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 1.7e-15 85.5 50 80.0
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 1.3e-13 79.3 44 86.4
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 5.3e-12 73.9 45 84.4
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 1.3e-10 69.3 54 66.7
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 2.2e-10 68.6 42 73.8
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 2.9e-10 68.2 37 83.8
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 6.4e-10 67.0 37 83.8
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 6.4e-10 67.0 37 83.8
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 6.4e-10 67.0 37 83.8
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 8.4e-10 66.6 46 67.4
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.2e-09 64.7 37 78.4
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.2e-09 64.7 37 78.4
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 3.2e-09 64.7 38 78.9
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 5.4e-09 63.9 36 80.6
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 5.4e-09 63.9 46 65.2
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 7.1e-09 63.5 37 78.4
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 7.1e-09 63.5 38 76.3
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 7.1e-09 63.5 38 76.3
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 1.2e-08 62.8 36 77.8
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 2.1e-08 62.0 37 75.7
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 2.7e-08 61.6 36 75.0
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 2.7e-08 61.6 36 77.8
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 2.7e-08 61.6 37 75.7
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 3.5e-08 61.2 32 84.4
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 3.5e-08 61.2 32 84.4
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 3.5e-08 61.2 32 84.4
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 4.6e-08 60.8 37 70.3
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 4.6e-08 60.8 37 73.0
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 4.6e-08 60.8 40 65.0
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 6.0e-08 60.5 37 73.0
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 6.0e-08 60.5 32 81.2
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 6.0e-08 60.5 32 84.4
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 7.9e-08 60.1 35 74.3
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 7.9e-08 60.1 37 70.3
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 7.9e-08 60.1 37 70.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 7.9e-08 60.1 51 56.9
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 7.9e-08 60.1 32 81.2
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 7.9e-08 60.1 37 70.3
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 7.9e-08 60.1 34 76.5
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 1.0e-07 59.7 37 70.3
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 84.4
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 81.2
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 1.0e-07 59.7 38 68.4
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 84.4
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 81.2
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 84.4
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 84.4
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 1.0e-07 59.7 32 84.4
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 1.3e-07 59.3 32 81.2
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.8e-07 58.9 32 78.1
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 1.8e-07 58.9 37 67.6
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 2.3e-07 58.5 32 81.2
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 2.3e-07 58.5 32 81.2
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 2.3e-07 58.5 32 81.2
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 3.0e-07 58.2 32 75.0
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 3.0e-07 58.2 32 81.2
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 3.0e-07 58.2 35 71.4
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 3.9e-07 57.8 31 83.9
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 3.9e-07 57.8 39 64.1
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 5.1e-07 57.4 32 78.1
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 6.7e-07 57.0 37 70.3
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 6.7e-07 57.0 35 74.3
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 6.7e-07 57.0 37 70.3
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 6.7e-07 57.0 37 67.6
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 8.7e-07 56.6 35 68.6
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 8.7e-07 56.6 44 59.1
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 1.1e-06 56.2 38 63.2
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 1.1e-06 56.2 32 78.1
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.1e-06 56.2 32 71.9
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.1e-06 56.2 32 71.9
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 1.5e-06 55.8 32 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 1.5e-06 55.8 38 60.5
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 1.9e-06 55.5 32 78.1
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 1.9e-06 55.5 37 62.2
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 1.9e-06 55.5 30 76.7
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.9e-06 55.5 44 52.3
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 2.5e-06 55.1 37 62.2
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 3.3e-06 54.7 42 61.9
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 4.3e-06 54.3 32 68.8
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 5.6e-06 53.9 32 68.8
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 7.4e-06 53.5 37 62.2
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 7.4e-06 53.5 32 68.8
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 9.6e-06 53.1 32 68.8


User provided reference genes

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