Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1777.7 898 100.0
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1496.1 880 86.8
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1494.6 880 86.7
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1484.5 880 85.7
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1477.6 880 85.7
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1456.0 880 84.2
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1451.0 880 83.5
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1450.3 880 83.4
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1446.4 881 83.4
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1443.7 881 83.3
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1427.2 878 83.6
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1332.4 882 77.1
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1184.9 888 67.9
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1162.1 887 66.9
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1159.1 889 67.2
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1147.9 883 68.2
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1147.1 887 66.1
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1144.4 890 66.0
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1143.6 889 65.9
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1137.1 888 65.7
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1134.0 877 67.5
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1133.6 901 65.7
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1130.5 883 68.0
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1129.4 886 65.5
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1129.0 888 66.6
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1126.7 879 65.8
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1125.9 894 66.6
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1125.9 887 65.8
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1125.2 888 65.3
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1109.4 877 65.5
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1108.6 887 64.9
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1104.4 873 65.2
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1104.4 889 66.0
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1104.0 890 66.2
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1104.0 888 66.1
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1103.2 884 64.5
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1103.2 891 66.0
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1103.2 874 65.1
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1102.8 899 63.4
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1100.9 865 65.7
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1098.6 879 63.3
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1094.7 879 64.6
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1087.8 884 62.9
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1087.4 884 62.6
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1086.2 879 64.5
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1085.1 884 62.4
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1082.4 874 63.6
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1081.6 881 63.0
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1081.2 886 63.4
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1080.5 872 64.8
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1079.3 878 63.8
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1079.3 881 63.1
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1077.0 878 63.2
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 6.1e-312 1073.9 871 63.5
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 6.1e-312 1073.9 871 63.5
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 5.5e-311 1070.8 892 62.8
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 9.2e-311 1070.1 888 63.3
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 9.2e-311 1070.1 878 63.3
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 1.2e-310 1069.7 886 62.5
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 1.2e-310 1069.7 888 64.1
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 2.7e-310 1068.5 893 63.8
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 6.1e-310 1067.4 882 62.1
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 3.0e-309 1065.1 892 62.8
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 3.9e-309 1064.7 884 62.1
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 1.1e-308 1063.1 885 62.1
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 1.5e-308 1062.8 900 62.0
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 4.3e-308 1061.2 890 61.6
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 5.7e-308 1060.8 886 63.2
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 9.7e-308 1060.1 869 63.9
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 1.7e-307 1059.3 881 63.5
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 4.1e-306 1054.7 901 62.5
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 9.1e-306 1053.5 885 61.7
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 2.9e-304 1048.5 847 63.8
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 6.5e-304 1047.3 895 61.7
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 2.7e-302 1042.0 893 61.9
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 5.1e-301 1037.7 889 60.6
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 4.8e-299 1031.2 872 61.9
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 1.2e-297 1026.5 869 61.6
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 6.1e-294 1014.2 840 63.8
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 1.8e-293 1012.7 894 59.2
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 1.1e-292 1010.0 869 60.9
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 6.3e-291 1004.2 859 61.4
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 1.1e-290 1003.4 874 60.8
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 1.7e-288 996.1 894 60.3
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 3.2e-287 991.9 826 62.6
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.2e-283 979.2 856 60.0
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 4.1e-282 974.9 909 58.3
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 9.4e-279 963.8 911 56.8
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 9.8e-268 927.2 782 62.8
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 1.4e-266 923.3 879 55.9
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 8.6e-264 914.1 892 56.8
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 1.0e-261 907.1 906 54.4
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 9.2e-258 894.0 893 55.1
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 3.5e-257 892.1 766 60.3
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 2.5e-247 859.4 766 59.1
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 7.6e-236 821.2 830 53.0
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 4.6e-233 812.0 877 51.1
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 6.2e-230 801.6 774 56.1
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 2.4e-189 666.8 921 42.9
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 1.2e-180 637.9 653 52.4
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 8.5e-179 631.7 877 42.4
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 7.5e-167 592.0 889 41.8
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.6e-156 557.8 880 38.3
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.5e-156 556.6 736 44.0
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.5e-154 550.4 467 60.0
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 3.9e-147 526.6 457 58.4
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 8.9e-144 515.4 538 52.8
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.0e-141 505.8 523 52.0
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 1.4e-109 401.7 488 47.7
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-97 361.3 331 58.0
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-97 361.3 331 58.0
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 2.1e-97 361.3 331 58.0
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 7.6e-87 326.2 323 52.3
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 5.0e-78 297.0 169 78.7
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 1.1e-77 295.8 1007 27.8
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 5.5e-69 266.9 233 60.1
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 5.5e-69 266.9 233 60.1
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 7.4e-66 256.5 256 54.3
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 9.1e-56 223.0 134 76.9
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 1.2e-47 196.1 120 77.5
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 2.3e-43 181.8 115 75.7
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 9.5e-37 159.8 93 78.5
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.4e-35 156.0 234 37.2
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.4e-32 146.0 92 71.7
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 1.5e-29 136.0 75 82.7
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 3.6e-28 131.3 352 29.8
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.6e-23 115.9 176 41.5
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 1.0e-22 113.2 65 78.5
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 5.2e-19 100.9 125 50.4
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 6.4e-17 94.0 98 52.0
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-15 89.7 217 26.7
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.5e-15 88.2 201 29.9
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.0e-14 85.1 236 26.7
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.5e-13 82.8 185 29.7
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.5e-13 82.0 151 31.8
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-12 79.7 183 29.5
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.8e-12 78.6 151 30.5
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.6e-12 78.2 60 65.0
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.1e-12 77.0 187 29.4
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.4e-11 76.3 226 26.5
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.8e-11 75.9 159 31.4
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.8e-11 75.9 212 25.5
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-11 75.5 152 30.9
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-11 75.5 178 28.1
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-11 75.5 155 29.0
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.0e-11 74.7 177 27.7
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 2.0e-10 72.4 156 30.1
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 4.4e-10 71.2 154 30.5
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-09 69.7 159 28.9
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 1.3e-09 69.7 167 31.7
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.9e-09 68.6 156 30.1
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 6.4e-09 67.4 219 26.0
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 6.4e-09 67.4 46 67.4
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 8.4e-09 67.0 166 27.7
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-08 65.9 212 28.8
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 2.4e-08 65.5 64 54.7
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 3.2e-08 65.1 167 26.9
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 7.1e-08 63.9 201 26.4
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 1.6e-07 62.8 109 35.8
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 3.5e-07 61.6 116 35.3
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 4.6e-07 61.2 173 27.2
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 7.8e-07 60.5 116 35.3
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 1.7e-06 59.3 194 28.9
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 2.3e-06 58.9 155 25.2
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 3.0e-06 58.5 124 37.1
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.9e-06 58.2 173 26.6
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 3.9e-06 58.2 153 28.1
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.9e-06 58.2 173 26.6
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 6.6e-06 57.4 43 62.8


User provided reference genes

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