Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G15960 Aethionema arabicum HOM05D001749 ORTHO05D001632 5.9e-101 370.9 197 100.0
Sp7g32350 Schrenkiella parvula HOM05D001749 ORTHO05D001632 3.8e-55 218.8 212 59.9
CARHR242840 Cardamine hirsuta HOM05D001749 ORTHO05D001632 3.2e-54 215.7 209 60.8
Carub.0007s0573 Capsella rubella HOM05D001749 ORTHO05D001632 2.1e-53 213.0 212 59.4
AT4G34560 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 7.9e-53 211.1 212 59.9
AL7G16650 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 1.8e-52 209.9 213 59.6
Thhalv10027578m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 7.4e-51 204.5 212 59.0
BolC1t00411H Brassica oleracea HOM05D001749 ORTHO05D001632 9.0e-49 197.6 205 59.0
C01p04240 Brassica napus HOM05D001749 ORTHO05D001632 5.8e-48 194.9 205 58.0
A01p03930 Brassica napus HOM05D001749 ORTHO05D001632 7.6e-48 194.5 205 59.5
C07p60620 Brassica napus HOM05D001749 ORTHO05D001632 1.3e-47 193.7 213 54.9
BolC7t46492H Brassica oleracea HOM05D001749 ORTHO05D001632 2.2e-47 193.0 213 54.5
BraA01t00380Z Brassica rapa HOM05D001749 ORTHO05D001632 2.2e-47 193.0 205 59.0
A03p62950 Brassica napus HOM05D001749 ORTHO05D001632 8.4e-47 191.0 213 54.0
BraA03t15370Z Brassica rapa HOM05D001749 ORTHO05D001632 8.4e-47 191.0 213 54.0
BcaNung00687 Brassica carinata HOM05D001749 ORTHO05D001632 1.1e-41 174.1 205 54.6
THA.LOC104807305 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 2.1e-37 159.8 216 49.5
THA.LOC104819615 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 1.5e-27 127.1 215 44.7
MD10G1072700 Malus domestica HOM05D001749 ORTHO05D001632 6.1e-21 105.1 218 37.6
RcHm_v2.0_Chr6g0265051 Rosa chinensis HOM05D001749 ORTHO05D001632 6.7e-20 101.7 223 37.7
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 2.0e-19 100.1 216 38.4
CsaV3_2G014930 Cucumis sativus L. HOM05D001749 ORTHO05D001632 2.6e-19 99.8 223 36.3
FvH4_2g09200 Fragaria vesca HOM05D001749 ORTHO05D001632 2.6e-19 99.8 223 35.9
FAN15G1825 Fragaria x ananassa HOM05D001749 ORTHO05D001632 2.6e-19 99.8 223 35.9
FAN24G3069 Fragaria x ananassa HOM05D001749 ORTHO05D001632 2.6e-19 99.8 223 35.9
Sabra09G0091300 Salix brachista HOM05D001749 ORTHO05D001632 4.4e-19 99.0 219 38.8
MD05G1064000 Malus domestica HOM05D001749 ORTHO05D001632 7.4e-19 98.2 218 37.2
Manes.04G074762 Manihot esculenta HOM05D001749 ORTHO05D001632 9.7e-19 97.8 221 36.7
COL.COLO4_25968 Corchorus olitorius HOM05D001749 ORTHO05D001632 1.3e-18 97.4 226 36.7
QL11p044367 Quercus lobata HOM05D001749 ORTHO05D001632 1.3e-18 97.4 196 37.8
Gohir.A03G196000 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.7e-18 97.1 213 35.7
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 4.8e-18 95.5 219 37.4
Duzib248G0723 Durio zibethinus HOM05D001749 ORTHO05D001632 8.2e-18 94.7 217 35.5
TWI79G0604 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 8.2e-18 94.7 210 37.6
Atru.chr5.3055 Acer truncatum HOM05D001749 ORTHO05D001632 1.1e-17 94.4 205 36.1
ClCG11G004240 Citrullus lanatus HOM05D001749 ORTHO05D001632 1.1e-17 94.4 225 36.0
Gohir.D02G217101 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.8e-17 93.6 214 35.0
Thecc.02G082100 Theobroma cacao HOM05D001749 ORTHO05D001632 1.8e-17 93.6 225 34.7
FAN27G1258 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.1e-17 92.8 224 35.7
Gorai.005G245100 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.5e-16 90.5 214 34.1
Hma1.2p1_0066F.1_g036220 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 2.6e-16 89.7 208 34.6
Prupe.8G094100 Prunus persica HOM05D001749 ORTHO05D001632 2.6e-16 89.7 219 36.1
MELO3C023313.2 Cucumis melo HOM05D001749 ORTHO05D001632 4.5e-16 89.0 229 34.5
Cpa.g.sc106.17 Carica papaya HOM05D001749 ORTHO05D001632 5.9e-16 88.6 255 30.2
TWI31G0051 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 1.0e-15 87.8 198 36.4
Duzib052G0040 Durio zibethinus HOM05D001749 ORTHO05D001632 1.3e-15 87.4 222 32.0
Duzib132G0910 Durio zibethinus HOM05D001749 ORTHO05D001632 1.7e-15 87.0 223 35.0
Gohir.D13G031200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.7e-15 87.0 210 35.7
CiPaw.06G133900 Carya illinoinensis HOM05D001749 ORTHO05D001632 2.9e-15 86.3 210 32.4
Ciclev10029211m.g Citrus clementina HOM05D001749 ORTHO05D001632 2.9e-15 86.3 216 33.8
Eucgr.I01283 Eucalyptus grandis HOM05D001749 ORTHO05D001632 2.9e-15 86.3 208 35.1
Cfa005037 Carpinus fangiana HOM05D001749 ORTHO05D001632 3.8e-15 85.9 211 35.5
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 3.8e-15 85.9 219 32.9
Gorai.013G035600 Gossypium raimondii HOM05D001749 ORTHO05D001632 5.0e-15 85.5 210 35.2
Gohir.A13G033300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 8.5e-15 84.7 210 35.2
Oeu041631.1 Olea europaea HOM05D001749 ORTHO05D001632 1.1e-14 84.3 203 32.5
TWI79G0729 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 1.9e-14 83.6 198 36.9
Dinv23498 Davidia involucrata HOM05D001749 ORTHO05D001632 2.5e-14 83.2 195 36.4
Glyma.12G041200 Glycine max HOM05D001749 ORTHO05D001632 3.2e-14 82.8 215 32.1
Sed0016213 Sechium edule HOM05D001749 ORTHO05D001632 4.2e-14 82.4 267 31.5
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 9.4e-14 81.3 235 31.9
CiPaw.05G066900 Carya illinoinensis HOM05D001749 ORTHO05D001632 1.6e-13 80.5 198 32.8
PGR142G0388 Punica granatum HOM05D001749 ORTHO05D001632 1.6e-13 80.5 213 33.8
VMungo1309G2481 Vigna mungo HOM05D001749 ORTHO05D001632 1.6e-13 80.5 195 33.8
CANSAT11G0884 Cannabis sativa HOM05D001749 ORTHO05D001632 3.6e-13 79.3 231 32.0
Glyma.04G011000 Glycine max HOM05D001749 ORTHO05D001632 3.6e-13 79.3 192 33.3
Sabra04G0105300 Salix brachista HOM05D001749 ORTHO05D001632 3.6e-13 79.3 215 35.8
Haze_02351 Corylus avellana HOM05D001749 ORTHO05D001632 4.7e-13 79.0 202 31.7
EL10Ac9g21701 Beta vulgaris HOM05D001749 ORTHO05D001632 6.1e-13 78.6 213 33.8
Actinidia00539 Actinidia chinensis HOM05D001749 ORTHO05D001632 8.0e-13 78.2 211 31.3
Haze_02352 Corylus avellana HOM05D001749 ORTHO05D001632 1.0e-12 77.8 201 31.8
Migut.N01252 Erythranthe guttata HOM05D001749 ORTHO05D001632 1.8e-12 77.0 211 33.2
Cfa005035 Carpinus fangiana HOM05D001749 ORTHO05D001632 2.3e-12 76.6 204 30.9
Haze_02350 Corylus avellana HOM05D001749 ORTHO05D001632 3.0e-12 76.3 210 31.0
Migut.B00219 Erythranthe guttata HOM05D001749 ORTHO05D001632 3.0e-12 76.3 215 32.1
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 6.7e-12 75.1 227 30.8
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 8.8e-12 74.7 213 31.5
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 8.8e-12 74.7 213 31.5
Phvul.009G022300 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 8.8e-12 74.7 202 32.2
Lj1g0015330 Lotus japonicus HOM05D001749 ORTHO05D001632 1.1e-11 74.3 246 28.0
Dinv42048 Davidia involucrata HOM05D001749 ORTHO05D001632 1.5e-11 73.9 117 41.9
Phvul.011G043200 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 1.5e-11 73.9 197 28.9
MSTRG.5404 Avicennia marina HOM05D001749 ORTHO05D001632 2.0e-11 73.6 231 32.0
Lalb_Chr11g0061321 Lupinus albus HOM05D001749 ORTHO05D001632 2.6e-11 73.2 254 28.3
SalBow6G3784 Salvia bowleyana HOM05D001749 ORTHO05D001632 2.6e-11 73.2 205 32.2
Glyma.11G115300 Glycine max HOM05D001749 ORTHO05D001632 4.4e-11 72.4 215 29.8
SalBow3G2565 Salvia bowleyana HOM05D001749 ORTHO05D001632 4.4e-11 72.4 179 34.6
TAR625G0803 Trochodendron aralioides HOM05D001749 ORTHO05D001632 5.7e-11 72.0 216 31.5
Cc02_g17320 Coffea canephora HOM05D001749 ORTHO05D001632 9.7e-11 71.2 238 29.8
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 9.7e-11 71.2 230 29.6
Glyma.06G010900 Glycine max HOM05D001749 ORTHO05D001632 1.3e-10 70.9 209 31.1
CiPaw.06G133800 Carya illinoinensis HOM05D001749 ORTHO05D001632 2.8e-10 69.7 199 33.2
Rhsim11G0179200 Rhododendron simsii HOM05D001749 ORTHO05D001632 2.8e-10 69.7 210 33.8
Ca_15357_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 3.7e-10 69.3 243 30.0
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 3.7e-10 69.3 231 32.5
VMungo0251G1135 Vigna mungo HOM05D001749 ORTHO05D001632 3.7e-10 69.3 203 28.6
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 6.3e-10 68.6 217 30.0
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 8.2e-10 68.2 241 29.5
Oeu061220.1 Olea europaea HOM05D001749 ORTHO05D001632 1.1e-09 67.8 198 28.8
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.4e-09 67.4 221 29.4
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.4e-09 67.4 223 31.8
SGA_v2.0_scaffold58G20512 Striga asiatica HOM05D001749 ORTHO05D001632 1.4e-09 67.4 210 31.4
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 1.8e-09 67.0 224 31.2
AUR62016762 Chenopodium quinoa HOM05D006463 ORTHO05D002997 3.1e-09 66.2 180 35.0
Ca_20902_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 3.1e-09 66.2 169 33.7
Phvul.009G022400 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 4.1e-09 65.9 156 34.6
CDE02G3540 Ceratophyllum demersum HOM05D001749 ORTHO05D001632 7.0e-09 65.1 208 30.8
Ah.05g177040 Amaranthus hybridus HOM05D001749 ORTHO05D001632 1.2e-08 64.3 207 30.0
Nitab4.5_0000199g0040 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.2e-08 64.3 214 32.2
Medtr4g070660 Medicago truncatula HOM05D001749 ORTHO05D001632 1.6e-08 63.9 220 30.0
PGSC0003DMG400000718 Solanum tuberosum HOM05D001749 ORTHO05D001632 1.6e-08 63.9 219 29.7
AUR62011296 Chenopodium quinoa HOM05D001749 ORTHO05D001632 2.6e-08 63.2 185 35.1
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 3.5e-08 62.8 227 30.0
arahy.Tifrunner.gnm1.ann1.RJ9RH5 Arachis hypogaea HOM05D001749 ORTHO05D001632 4.5e-08 62.4 221 28.1
DCAR_021933 Daucus carota HOM05D001749 ORTHO05D001632 5.9e-08 62.0 222 29.7
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 5.9e-08 62.0 225 32.0
DCAR_022986 Daucus carota HOM05D001749 ORTHO05D001632 7.7e-08 61.6 221 30.8
PGSC0003DMG400000715 Solanum tuberosum HOM05D001749 ORTHO05D001632 7.7e-08 61.6 202 31.7
TPR.G32205 Trifolium pratense HOM05D001749 ORTHO05D001632 1.0e-07 61.2 241 29.5
CAN.G1058.9 Capsicum annuum HOM05D001749 ORTHO05D001632 1.3e-07 60.8 237 28.3
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 1.3e-07 60.8 210 31.4
TPR.G30499 Trifolium pratense HOM05D001749 ORTHO05D001632 1.3e-07 60.8 223 27.8
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 2.2e-07 60.1 228 26.8
Peaxi162Scf00684g00210 Petunia axillaris HOM05D001749 ORTHO05D001632 2.2e-07 60.1 243 30.0
Sc16g0002570 Simmondsia chinensis HOM05D001749 ORTHO05D001632 2.2e-07 60.1 197 30.5
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 3.8e-07 59.3 219 28.3
AUR62014496 Chenopodium quinoa HOM05D001749 ORTHO05D001632 3.8e-07 59.3 236 25.0
Nitab4.5_0000308g0310 Nicotiana tabacum HOM05D001749 ORTHO05D001632 3.8e-07 59.3 123 38.2
Potri.005G120300 Populus trichocarpa HOM05D001749 ORTHO05D001632 3.8e-07 59.3 254 29.1
MSTRG.27689 Avicennia marina HOM05D001749 ORTHO05D001632 5.0e-07 58.9 219 31.1
Nitab4.5_0018301g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 5.0e-07 58.9 251 27.9
PSO541G5621 Papaver somniferum HOM05D001749 ORTHO05D001632 5.0e-07 58.9 250 26.4
Actinidia27886 Actinidia chinensis HOM05D001749 ORTHO05D001632 6.5e-07 58.5 155 33.5
arahy.Tifrunner.gnm1.ann1.39NQDQ Arachis hypogaea HOM05D001749 ORTHO05D001632 6.5e-07 58.5 280 23.9
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 6.5e-07 58.5 227 30.0
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 6.5e-07 58.5 217 28.6
Medtr4g070640 Medicago truncatula HOM05D001749 ORTHO05D001632 6.5e-07 58.5 203 26.6
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 8.5e-07 58.2 235 28.5
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 8.5e-07 58.2 217 28.6
arahy.Tifrunner.gnm1.ann1.HXWY1L Arachis hypogaea HOM05D001749 ORTHO05D001632 1.1e-06 57.8 290 23.4
Sc03g0003140 Simmondsia chinensis HOM05D001749 ORTHO05D001632 1.1e-06 57.8 215 31.6
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.5e-06 57.4 219 28.3
Oeu029154.2 Olea europaea HOM05D001749 ORTHO05D001632 1.5e-06 57.4 226 27.0
Solyc01g109810.2 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.5e-06 57.4 226 30.5
PGSC0003DMG400000717 Solanum tuberosum HOM05D001749 ORTHO05D001632 1.5e-06 57.4 251 28.7
Migut.H02524 Erythranthe guttata HOM05D001749 ORTHO05D001632 2.5e-06 56.6 199 29.1
Gohir.A10G096200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.5e-06 56.6 218 29.8
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 3.2e-06 56.2 221 28.5
HanXRQChr16g0505471 Helianthus annuus HOM05D001749 ORTHO05D001632 3.2e-06 56.2 261 26.8
Ah.03g141140 Amaranthus hybridus HOM05D001749 ORTHO05D001632 4.2e-06 55.8 212 31.6
Nitab4.5_0011923g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 4.2e-06 55.8 235 29.8
CAN.G358.46 Capsicum annuum HOM05D001749 ORTHO05D001632 5.5e-06 55.5 233 26.6
AUR62038042 Chenopodium quinoa HOM05D001749 ORTHO05D001632 5.5e-06 55.5 210 28.1
Cc07_g09890 Coffea canephora HOM05D001749 ORTHO05D001632 5.5e-06 55.5 245 26.9
Sabra05G0099000 Salix brachista HOM05D001749 ORTHO05D001632 5.5e-06 55.5 254 25.6
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 7.2e-06 55.1 233 30.0
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 7.2e-06 55.1 236 28.4
DCAR_003661 Daucus carota HOM05D001749 ORTHO05D001632 9.4e-06 54.7 225 28.4
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 9.4e-06 54.7 222 28.8
Sopen01g051990 Solanum pennellii HOM05D001749 ORTHO05D001632 9.4e-06 54.7 215 29.3
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 9.4e-06 54.7 233 27.5


User provided reference genes

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