Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.5e-64 247.7 118 100.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 5.2e-60 234.2 118 92.4
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 7.5e-59 230.3 118 91.5
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 7.5e-59 230.3 118 91.5
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 7.5e-59 230.3 118 91.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 9.8e-59 229.9 118 90.7
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 9.8e-59 229.9 118 90.7
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 9.8e-59 229.9 118 90.7
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 9.8e-59 229.9 118 90.7
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-58 228.4 118 89.8
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 3.7e-58 228.0 118 89.8
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 3.7e-58 228.0 118 89.8
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 3.7e-58 228.0 118 89.8
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 3.7e-58 228.0 118 89.8
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 3.7e-58 228.0 118 89.8
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 6.4e-58 227.3 118 89.8
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.8e-57 225.7 118 89.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 9.2e-57 223.4 118 89.0
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 2.7e-56 221.9 118 85.6
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 5.9e-56 220.7 117 88.0
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-55 219.9 118 86.4
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 8.0e-53 210.3 153 69.3
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.0e-51 205.7 110 87.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 5.8e-51 204.1 116 81.0
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.0
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 81.0
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 80.2
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 81.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 81.0
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 80.2
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 80.2
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.9e-50 201.8 116 80.2
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 6.4e-50 200.7 113 79.6
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 8.3e-50 200.3 116 78.4
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 76.7
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 7.0e-49 197.2 116 78.4
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 7.0e-49 197.2 116 79.3
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.0e-48 195.7 111 79.3
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 112 80.4
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 78.6
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 3.5e-48 194.9 114 78.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.5e-48 194.9 113 77.0
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 6.0e-48 194.1 116 77.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.0e-48 194.1 116 77.6
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 7.8e-48 193.7 111 77.5
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 7.8e-48 193.7 115 74.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.0e-47 193.4 116 77.6
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.0e-47 193.4 114 77.2
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 1.3e-47 193.0 112 76.8
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.3e-47 193.0 115 76.5
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.7e-47 192.6 116 75.9
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.7e-47 192.6 116 76.7
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.7e-47 192.6 116 76.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.3e-47 192.2 117 76.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 2.3e-47 192.2 115 73.9
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.9e-47 191.4 116 75.9
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 3.9e-47 191.4 113 77.9
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 6.6e-47 190.7 115 74.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 6.6e-47 190.7 115 76.5
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.6e-47 190.7 116 76.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 6.6e-47 190.7 111 74.8
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 8.6e-47 190.3 112 75.0
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 8.6e-47 190.3 113 77.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.1e-46 189.9 113 77.0
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.1e-46 189.9 111 79.3
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.5e-46 189.5 112 75.0
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.5e-46 189.5 116 75.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.5e-46 189.5 115 75.7
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.9e-46 189.1 111 76.6
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.9e-46 189.1 111 78.4
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 75.2
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 112 76.8
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 111 74.8
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 111 74.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.5e-46 188.7 116 73.3
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.5e-46 188.7 116 73.3
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 3.3e-46 188.3 116 73.3
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.3e-46 188.3 118 75.4
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 3.3e-46 188.3 116 73.3
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 3.3e-46 188.3 112 75.9
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 5.6e-46 187.6 113 74.3
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 5.6e-46 187.6 112 75.0
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 5.6e-46 187.6 116 75.0
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.5e-46 186.8 115 73.9
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 9.5e-46 186.8 111 73.0
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-45 186.4 116 73.3
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.6e-45 186.0 112 73.2
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.1e-45 185.7 115 73.0
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.8e-45 185.3 115 72.2
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 3.6e-45 184.9 116 74.1
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.7e-45 184.5 112 72.3
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 4.7e-45 184.5 112 73.2
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 4.7e-45 184.5 111 75.7
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 4.7e-45 184.5 112 75.0
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 6.2e-45 184.1 111 74.8
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 3.1e-44 181.8 112 72.3
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 4.0e-44 181.4 113 75.2
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 4.0e-44 181.4 115 70.4
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 5.2e-44 181.0 112 70.5
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 6.8e-44 180.6 115 71.3
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 8.9e-44 180.3 112 72.3
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.6e-43 178.7 137 64.2
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 3.4e-43 178.3 116 71.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 7.5e-43 177.2 116 69.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 112 70.5
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.9e-42 175.3 112 70.5
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.9e-41 172.6 102 74.5
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.2e-41 171.8 110 71.8
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.1e-41 170.6 105 75.2
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.6e-40 169.5 104 76.0
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.1e-40 169.1 101 75.2
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 6.0e-40 167.5 104 75.0
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 7.8e-40 167.2 100 73.0
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.0e-39 166.8 106 69.8
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 8.6e-39 163.7 180 48.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-38 163.3 116 66.4
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.5e-38 162.9 96 78.1
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.5e-38 162.9 118 68.6
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 3.3e-38 161.8 102 70.6
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 5.6e-38 161.0 126 61.1
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.2e-34 149.1 91 75.8
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.2e-33 145.2 116 62.9
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.2e-33 143.7 115 61.7
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.7e-32 142.1 111 59.5
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 5.1e-31 137.9 112 53.6
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 6.6e-31 137.5 110 56.4
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 6.2e-29 131.0 116 51.7
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.4e-28 129.8 85 68.2
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-25 117.9 114 50.0
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.0e-23 112.1 85 64.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 6.6e-23 110.9 103 50.5
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.5e-22 109.0 58 93.1
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 4.3e-22 108.2 102 51.0
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 9.6e-22 107.1 58 75.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 4.8e-21 104.8 58 72.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.4e-20 103.2 60 71.7
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.1e-20 102.1 57 73.7
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-19 99.0 55 81.8
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.2e-18 95.9 58 69.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 3.8e-18 95.1 96 49.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 6.4e-18 94.4 113 45.1
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 4.2e-17 91.7 47 85.1
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 4.6e-16 88.2 58 77.6
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.3e-15 86.7 54 74.1
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.8e-15 86.3 138 38.4
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 1.8e-12 76.3 79 50.6
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 3.0e-07 58.9 109 30.3


User provided reference genes

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