Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 0.0e+00 2369.0 1298 100.0
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 0.0e+00 1396.3 1327 62.6
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 0.0e+00 1339.3 1288 62.1
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 0.0e+00 1310.0 1297 61.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 0.0e+00 1285.0 1325 59.8
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 0.0e+00 1281.9 1280 60.0
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 0.0e+00 1258.0 1307 60.0
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 0.0e+00 1089.7 1354 53.5
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 0.0e+00 1078.9 1261 55.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.0e-310 1068.9 1286 53.9
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 6.7e-310 1067.8 1286 53.8
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.8e-307 1059.7 1273 54.0
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.9e-195 687.6 1454 38.9
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 7.2e-195 685.6 1449 38.8
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 7.9e-194 682.2 1448 39.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 7.7e-189 665.6 1419 38.2
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 6.5e-188 662.5 1431 38.9
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 3.6e-186 656.8 1417 38.2
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.8e-183 647.1 1414 37.7
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.7e-183 646.7 1412 37.9
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 6.3e-183 646.0 1417 38.2
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 4.0e-177 626.7 1425 37.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.0e-176 624.4 1453 37.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 8.3e-175 619.0 1475 37.2
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 2.9e-172 610.5 1150 41.5
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.2e-171 607.1 1300 38.1
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 6.8e-169 599.4 1159 39.3
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 8.8e-169 599.0 1471 36.8
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 8.8e-169 599.0 1282 38.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-167 594.7 1430 37.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-167 594.7 1386 38.6
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-167 594.7 1493 36.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 3.7e-167 593.6 1494 36.2
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 4.8e-167 593.2 1445 38.0
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.4e-166 591.7 1495 36.0
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 2.5e-163 580.9 1444 37.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.6e-162 578.2 1266 37.8
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.6e-162 578.2 1194 39.8
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.8e-161 574.7 1191 40.0
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.8e-161 574.7 1192 40.0
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.2e-161 573.2 1188 38.8
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.4e-160 570.5 1449 35.0
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 9.8e-160 568.9 1245 38.8
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 3.2e-158 563.9 1243 37.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.0e-157 561.2 1164 37.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 4.5e-157 560.1 1436 35.9
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 7.8e-157 559.3 1141 38.5
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.7e-156 558.1 1418 36.7
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.7e-156 558.1 1175 38.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.3e-156 557.8 1418 36.6
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.9e-155 554.7 1232 37.7
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 2.5e-155 554.3 1257 36.8
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 7.3e-155 552.7 1198 37.7
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 2.1e-154 551.2 1297 34.7
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.1e-154 551.2 1212 37.3
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 6.1e-154 549.7 1163 37.5
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 8.0e-154 549.3 1360 35.6
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.6e-152 544.3 1149 37.7
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.7e-151 541.6 1239 37.6
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.2e-151 541.2 1154 38.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.0e-149 534.6 1214 35.9
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 2.0e-149 534.6 1211 37.5
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.0e-148 532.3 1253 36.6
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.3e-148 531.2 1174 37.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 5.0e-148 530.0 1294 35.9
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 6.6e-148 529.6 1239 36.2
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 8.6e-148 529.3 1250 37.4
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 8.6e-148 529.3 1260 36.9
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.5e-147 528.5 1187 38.1
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 2.1e-146 524.6 1177 36.2
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.4e-145 521.9 1228 36.5
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 4.0e-145 520.4 1233 36.5
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.1e-142 512.3 1210 36.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.1e-142 512.3 1285 34.5
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.4e-142 511.9 1181 37.5
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.4e-142 511.1 1180 36.3
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.0e-140 505.8 1191 36.3
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.0e-140 504.2 1217 35.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 6.6e-140 503.1 1095 38.0
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.5e-139 501.9 1117 37.5
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.9e-139 501.5 1170 37.3
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.6e-138 498.4 902 40.4
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.2e-135 488.0 1232 34.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 7.8e-133 479.6 1068 37.4
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.7e-132 478.4 1208 34.9
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.6e-132 476.5 442 63.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 8.6e-132 476.1 1256 36.1
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.3e-127 462.2 1058 37.4
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 9.3e-126 456.1 1257 34.4
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.1e-125 454.9 1147 35.0
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 2.3e-124 451.4 1103 36.1
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.0e-124 451.1 1207 33.9
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 8.1e-122 443.0 953 36.1
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.9e-118 431.8 1239 34.8
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 6.6e-116 423.3 1088 35.7
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 6.2e-114 416.8 1025 36.2
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 7.1e-110 403.3 435 54.9
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.0e-108 399.4 496 50.8
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.3e-108 398.3 859 37.1
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-107 395.6 1081 34.0
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.5e-107 394.8 1163 33.1
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.4e-103 379.8 1123 34.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.5e-99 369.0 587 46.7
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-92 345.5 1207 33.3
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.3e-91 340.9 580 45.0
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 6.9e-81 307.0 449 48.1
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-80 306.2 435 48.7
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 4.5e-80 304.3 868 33.4
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.7e-77 295.0 482 44.8
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 7.0e-73 280.4 611 40.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-70 272.3 467 44.1
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.2e-70 271.6 627 38.1
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.1e-69 268.9 567 36.7
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 5.2e-68 264.2 412 46.8
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 9.7e-67 260.0 436 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.3e-66 259.6 700 34.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 7.0e-65 253.8 1126 27.8
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.3e-63 249.6 791 33.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.3e-52 212.2 526 33.7
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.3e-44 185.7 303 41.3
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 4.1e-41 174.9 326 41.7
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 4.4e-35 154.8 181 48.1
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 5.8e-35 154.5 270 39.6
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.7e-34 152.9 337 35.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 7.8e-32 144.1 444 30.0
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 2.5e-30 139.0 274 45.3
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.1e-29 136.0 260 38.1
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.9e-26 124.8 414 28.5
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.4e-25 122.5 454 28.6
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 4.1e-25 121.7 137 55.5
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 5.4e-25 121.3 215 35.8
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 5.1e-23 114.8 556 27.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.5e-22 112.5 280 40.4
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 6.0e-16 91.3 577 25.5
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.4e-12 80.1 157 36.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.2e-12 78.2 146 38.4
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.5e-11 76.6 81 49.4
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.5e-11 76.6 506 25.7
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-09 70.1 66 43.9
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.3e-09 67.4 113 54.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.0e-07 63.9 63 54.0


User provided reference genes

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