Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 3.2e-267 924.5 457 100.0
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.8e-209 732.6 462 79.7
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.2e-208 729.9 462 78.8
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.2e-208 729.9 462 79.0
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 1.5e-203 713.0 476 76.5
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 1.9e-203 712.6 462 77.5
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 5.6e-203 711.1 462 77.3
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.1e-201 706.8 455 78.0
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 6.9e-201 704.1 462 76.6
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.6e-200 702.2 468 76.7
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 3.4e-200 701.8 462 76.8
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 2.9e-199 698.7 462 76.6
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 4.9e-199 698.0 482 73.9
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 2.4e-198 695.7 491 72.7
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.5e-195 686.4 457 75.1
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.5e-192 676.4 453 75.7
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 3.9e-180 635.2 421 76.2
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 1.6e-178 629.8 457 68.7
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.5e-176 623.2 457 67.2
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 2.9e-175 619.0 463 67.0
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.8e-175 618.6 463 66.7
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 1.4e-174 616.7 458 67.2
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.9e-174 616.3 463 66.1
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.6e-173 613.2 453 67.3
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 6.1e-173 611.3 461 65.3
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.3e-172 610.1 455 65.5
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.3e-172 610.1 457 66.1
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.8e-172 609.8 457 66.3
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 2.3e-172 609.4 457 65.9
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 3.9e-172 608.6 457 65.6
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.5e-171 606.7 463 65.7
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.5e-171 606.7 457 65.9
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.9e-171 606.3 457 65.9
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 1.9e-171 606.3 457 65.2
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 2.5e-171 605.9 447 67.6
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 9.7e-171 604.0 449 68.2
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.3e-170 603.6 453 66.4
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.3e-170 603.6 457 66.5
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.3e-170 603.6 457 65.6
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.2e-170 602.8 457 65.4
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 2.8e-170 602.4 463 65.2
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 3.7e-170 602.1 458 66.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 8.2e-170 600.9 457 64.6
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.1e-169 598.6 458 63.8
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 5.3e-169 598.2 458 64.4
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 9.1e-169 597.4 453 64.9
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.2e-168 597.0 457 66.3
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.2e-168 597.0 457 64.3
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 1.5e-168 596.7 457 64.3
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 2.0e-168 596.3 463 65.0
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.6e-168 595.9 453 66.0
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 3.4e-168 595.5 440 65.0
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.4e-168 595.5 457 65.4
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 3.4e-168 595.5 447 66.4
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 4.5e-168 595.1 482 63.9
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 4.5e-168 595.1 457 64.8
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 4.5e-168 595.1 464 64.4
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 7.7e-168 594.3 483 61.3
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.0e-167 594.0 468 63.9
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.0e-167 594.0 457 65.2
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.7e-167 593.2 453 65.1
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 3.8e-167 592.0 448 63.8
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 5.0e-167 591.7 453 64.0
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 6.5e-167 591.3 460 64.1
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.5e-166 589.3 452 66.4
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 2.5e-166 589.3 458 63.8
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 3.2e-166 589.0 483 61.7
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 7.2e-166 587.8 455 65.3
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 9.4e-166 587.4 454 64.5
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 6.1e-165 584.7 450 65.3
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 6.1e-165 584.7 422 68.0
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 1.8e-164 583.2 463 62.6
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 3.0e-164 582.4 457 64.3
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 6.7e-164 581.3 457 63.0
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 8.8e-164 580.9 451 65.0
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 5.7e-163 578.2 458 62.4
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.5e-160 570.1 436 66.3
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 2.0e-160 569.7 457 61.7
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 2.0e-160 569.7 453 62.0
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 7.7e-160 567.8 467 60.2
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 7.7e-160 567.8 457 63.9
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.2e-159 566.2 465 62.6
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 6.5e-159 564.7 457 62.1
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.4e-158 563.5 453 62.0
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 2.5e-158 562.8 449 62.8
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 2.5e-158 562.8 440 65.2
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 2.7e-157 559.3 465 61.9
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 2.7e-157 559.3 471 60.1
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 2.6e-155 552.7 441 60.3
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 1.0e-151 540.8 430 62.8
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 3.8e-151 538.9 468 59.2
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 4.2e-150 535.4 457 60.4
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 7.2e-150 534.6 492 55.7
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 9.4e-150 534.3 510 57.1
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.6e-149 533.5 415 62.9
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.6e-147 526.2 416 64.7
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 9.1e-145 517.7 472 58.1
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 9.1e-145 517.7 392 64.3
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 2.9e-143 512.7 418 61.2
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 8.0e-141 504.6 450 62.7
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.2e-139 500.7 389 65.0
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 6.3e-138 495.0 452 56.6
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 3.1e-137 492.7 455 54.7
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.2e-136 490.7 470 55.3
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.5e-134 483.0 453 55.8
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 2.5e-134 483.0 444 55.6
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 4.2e-134 482.3 438 55.5
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.1e-129 467.6 436 54.8
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 1.0e-127 461.1 442 52.0
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 8.9e-124 448.0 331 67.4
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 1.4e-108 397.5 282 68.4
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 7.8e-96 355.1 443 41.8
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.0e-92 342.8 452 42.3
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.9e-84 315.5 457 42.5
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 2.2e-82 310.5 369 47.4
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 6.0e-80 302.4 317 51.4
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 4.3e-78 296.2 495 36.4
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 8.4e-66 255.4 160 74.4
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.4e-52 211.5 108 86.1
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.2e-51 208.4 381 38.1
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 4.2e-49 199.9 175 58.9
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.6e-46 190.7 350 35.7
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 1.3e-34 151.8 124 62.9
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 3.0e-31 140.6 394 30.2
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 2.8e-29 134.0 85 65.9
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.4e-28 131.7 69 87.0
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.4e-28 131.0 113 61.9
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 1.1e-25 122.1 132 46.2
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 3.4e-22 110.5 102 55.9
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 4.8e-21 106.7 83 60.2
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 7.0e-20 102.8 190 33.7
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 3.5e-19 100.5 71 63.4
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 5.0e-18 96.7 67 65.7
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 8.9e-15 85.9 72 55.6
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 3.7e-13 80.5 104 44.2
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 4.9e-13 80.1 128 40.6
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 2.0e-11 74.7 100 49.0


User provided reference genes

Program Settings