Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G15200 Aethionema arabicum HOM05D002236 ORTHO05D002341 1.0e-34 149.4 72 100.0
Thhalv10025258m.g Eutrema salsugineum HOM05D002236 ORTHO05D002341 4.5e-14 80.9 68 64.7
CARHR243450 Cardamine hirsuta HOM05D002236 ORTHO05D002341 2.9e-13 78.2 67 64.2
Manes.04G070200 Manihot esculenta HOM05D002236 ORTHO05D002341 3.8e-13 77.8 64 62.5
Manes.11G098100 Manihot esculenta HOM05D002236 ORTHO05D002341 3.8e-13 77.8 66 62.1
Gohir.A04G132000 Gossypium hirsutum HOM05D002236 ORTHO05D002341 6.5e-13 77.0 71 59.2
Gohir.A12G036100 Gossypium hirsutum HOM05D002236 ORTHO05D002341 6.5e-13 77.0 76 56.6
Gohir.D12G036500 Gossypium hirsutum HOM05D002236 ORTHO05D002341 6.5e-13 77.0 76 56.6
Gorai.008G037700 Gossypium raimondii HOM05D002236 ORTHO05D002341 6.5e-13 77.0 76 56.6
Ciclev10028158m.g Citrus clementina HOM05D002236 ORTHO05D002341 8.5e-13 76.6 50 76.0
Atru.chr5.3456 Acer truncatum HOM05D002236 ORTHO05D002341 1.1e-12 76.3 76 56.6
MD05G1126500 Malus domestica HOM05D002236 ORTHO05D002341 1.1e-12 76.3 62 64.5
Thecc.02G053900 Theobroma cacao HOM05D002236 ORTHO05D002341 1.1e-12 76.3 52 73.1
Aa31sc739G20 Aethionema arabicum HOM05D002236 ORTHO05D002341 1.9e-12 75.5 76 53.9
Gohir.A01G171100 Gossypium hirsutum HOM05D002236 ORTHO05D002341 2.5e-12 75.1 51 72.5
AL7G16070 Arabidopsis lyrata HOM05D002236 ORTHO05D002341 3.2e-12 74.7 69 60.9
Dinv41909 Davidia involucrata HOM05D002236 ORTHO05D002341 3.2e-12 74.7 53 69.8
QL11p052516 Quercus lobata HOM05D002236 ORTHO05D002341 3.2e-12 74.7 55 69.1
Aa31LG2G15230 Aethionema arabicum HOM05D002236 ORTHO05D002341 4.2e-12 74.3 61 65.6
Gohir.D01G162100 Gossypium hirsutum HOM05D002236 ORTHO05D002341 4.2e-12 74.3 45 80.0
Hma1.2p1_0163F.1_g072800 Hydrangea macrophylla HOM05D002236 ORTHO05D002341 4.2e-12 74.3 45 80.0
Duzib052G0063 Durio zibethinus HOM05D002236 ORTHO05D002341 5.5e-12 73.9 78 57.7
Sp7g32910 Schrenkiella parvula HOM05D002236 ORTHO05D002341 5.5e-12 73.9 68 63.2
BcaNung00625 Brassica carinata HOM05D002236 ORTHO05D002341 7.2e-12 73.6 63 65.1
BraA01t00327Z Brassica rapa HOM05D002236 ORTHO05D002341 7.2e-12 73.6 63 65.1
CSS0007742 Camellia sinensis var. sinensis HOM05D002236 ORTHO05D002341 7.2e-12 73.6 49 73.5
Gohir.D04G168600 Gossypium hirsutum HOM05D002236 ORTHO05D002341 7.2e-12 73.6 71 56.3
Gorai.012G156900 Gossypium raimondii HOM05D002236 ORTHO05D002341 7.2e-12 73.6 71 56.3
COL.COLO4_36721 Corchorus olitorius HOM05D002236 ORTHO05D002341 9.4e-12 73.2 52 71.2
TAR628G1667 Trochodendron aralioides HOM05D002236 ORTHO05D002341 1.2e-11 72.8 45 80.0
Carub.0007s0516 Capsella rubella HOM05D002236 ORTHO05D002341 1.6e-11 72.4 45 75.6
Cpa.g.sc20.122 Carica papaya HOM05D002236 ORTHO05D002341 1.6e-11 72.4 61 60.7
FvH4_2g15750 Fragaria vesca HOM05D002236 ORTHO05D002341 1.6e-11 72.4 73 53.4
FAN24G0442 Fragaria x ananassa HOM05D002236 ORTHO05D002341 1.6e-11 72.4 73 53.4
FAN27G1825 Fragaria x ananassa HOM05D002236 ORTHO05D002341 1.6e-11 72.4 73 53.4
Sed0000019 Sechium edule HOM05D002236 ORTHO05D002341 1.6e-11 72.4 65 58.5
Lalb_Chr02g0143541 Lupinus albus HOM05D002236 ORTHO05D002341 2.1e-11 72.0 53 66.0
Rhsim05G0052400 Rhododendron simsii HOM05D002236 ORTHO05D002341 2.1e-11 72.0 44 81.8
A01p03400 Brassica napus HOM05D002236 ORTHO05D002341 2.7e-11 71.6 63 63.5
C01p03710 Brassica napus HOM05D002236 ORTHO05D002341 2.7e-11 71.6 63 63.5
BolC1t00363H Brassica oleracea HOM05D002236 ORTHO05D002341 2.7e-11 71.6 63 63.5
CiPaw.05G086000 Carya illinoinensis HOM05D002236 ORTHO05D002341 2.7e-11 71.6 43 81.4
FAN15G2184 Fragaria x ananassa HOM05D002236 ORTHO05D002341 2.7e-11 71.6 73 53.4
FAN20G0297 Fragaria x ananassa HOM05D002236 ORTHO05D002341 2.7e-11 71.6 73 53.4
vmacro17330 Vaccinium macrocarpon HOM05D002236 ORTHO05D002341 2.7e-11 71.6 49 69.4
VMungo0720G2845 Vigna mungo HOM05D002236 ORTHO05D002341 2.7e-11 71.6 43 79.1
CANSAT25G3144 Cannabis sativa HOM05D002236 ORTHO05D002341 3.6e-11 71.2 58 60.3
Lj5C176T2 Lonicera japonica HOM05D002236 ORTHO05D002341 4.6e-11 70.9 63 55.6
Phvul.007G017300 Phaseolus vulgaris HOM05D002236 ORTHO05D002341 4.6e-11 70.9 50 68.0
THA.LOC104807382 Tarenaya hassleriana HOM05D002236 ORTHO05D002341 4.6e-11 70.9 72 55.6
Dinv14132 Davidia involucrata HOM05D002236 ORTHO05D002341 6.1e-11 70.5 37 89.2
Sabra09G0107700 Salix brachista HOM05D002236 ORTHO05D002341 6.1e-11 70.5 55 63.6
TWI79G1766 Tripterygium wilfordii HOM05D002236 ORTHO05D002341 7.9e-11 70.1 43 81.4
Cc09_g10380 Coffea canephora HOM05D002236 ORTHO05D002341 1.0e-10 69.7 61 62.3
COL.COLO4_36723 Corchorus olitorius HOM05D002236 ORTHO05D002341 1.0e-10 69.7 49 73.5
Migut.B00047 Erythranthe guttata HOM05D002236 ORTHO05D002341 1.0e-10 69.7 61 59.0
RcHm_v2.0_Chr6g0279071 Rosa chinensis HOM05D002236 ORTHO05D002341 1.0e-10 69.7 41 78.0
unitig_62.g23661 Utricularia gibba HOM05D002236 ORTHO05D002341 1.0e-10 69.7 61 57.4
Aa31LG2G15240 Aethionema arabicum HOM05D002236 ORTHO05D002341 1.4e-10 69.3 65 53.8
Nitab4.5_0004557g0060 Nicotiana tabacum HOM05D002236 ORTHO05D002341 1.4e-10 69.3 42 78.6
Nitab4.5_0004867g0110 Nicotiana tabacum HOM05D002236 ORTHO05D002341 1.4e-10 69.3 42 78.6
Aqoxy5G01093 Aquilegia oxysepala HOM05D002236 ORTHO05D002341 1.8e-10 68.9 52 65.4
Cfa005296 Carpinus fangiana HOM05D002236 ORTHO05D002341 1.8e-10 68.9 61 62.3
Psat6g232800 Pisum sativum HOM05D002236 ORTHO05D002341 1.8e-10 68.9 60 58.3
Potri.009G139000 Populus trichocarpa HOM05D002236 ORTHO05D002341 1.8e-10 68.9 55 61.8
SalBow1G8665 Salvia bowleyana HOM05D002236 ORTHO05D002341 1.8e-10 68.9 48 70.8
CiPaw.06G119800 Carya illinoinensis HOM05D002236 ORTHO05D002341 2.3e-10 68.6 52 67.3
Eucgr.G01796 Eucalyptus grandis HOM05D002236 ORTHO05D002341 2.3e-10 68.6 54 64.8
PGR042G3186 Punica granatum HOM05D002236 ORTHO05D002341 3.0e-10 68.2 50 72.0
PGSC0003DMG400018642 Solanum tuberosum HOM05D002236 ORTHO05D002341 3.0e-10 68.2 42 78.6
Prupe.8G169900 Prunus persica HOM05D002236 ORTHO05D002341 3.9e-10 67.8 49 69.4
EL10Ac9g21330 Beta vulgaris HOM05D002236 ORTHO05D002341 5.1e-10 67.4 44 77.3
CSS0015306 Camellia sinensis var. sinensis HOM05D002236 ORTHO05D002341 5.1e-10 67.4 42 78.6
CSS0028877 Camellia sinensis var. sinensis HOM05D002236 ORTHO05D002341 5.1e-10 67.4 42 78.6
Gohir.A03G206300 Gossypium hirsutum HOM05D002236 ORTHO05D002341 5.1e-10 67.4 64 60.9
Sopen01g053900 Solanum pennellii HOM05D002236 ORTHO05D002341 5.1e-10 67.4 42 78.6
Rhsim11G0194100 Rhododendron simsii HOM05D002236 ORTHO05D002341 6.7e-10 67.0 74 50.0
TPR.G2449 Trifolium pratense HOM05D002236 ORTHO05D002341 6.7e-10 67.0 43 74.4
DCAR_022422 Daucus carota HOM05D002236 ORTHO05D002341 8.8e-10 66.6 41 73.2
Duzib248G0624 Durio zibethinus HOM05D002236 ORTHO05D002341 8.8e-10 66.6 45 71.1
Lj9C401G13 Lonicera japonica HOM05D000560 ORTHO05D002341 8.8e-10 66.6 38 81.6
Medtr1g113000 Medicago truncatula HOM05D002236 ORTHO05D002341 8.8e-10 66.6 43 74.4
TWI75G0200 Tripterygium wilfordii HOM05D002236 ORTHO05D002341 8.8e-10 66.6 62 59.7
AT4G35140 Arabidopsis thaliana HOM05D002236 ORTHO05D002341 1.1e-09 66.2 37 83.8
MSTRG.19968 Avicennia marina HOM05D002236 ORTHO05D002341 1.1e-09 66.2 53 67.9
Sp7g37300 Schrenkiella parvula HOM05D002236 ORTHO05D002341 1.1e-09 66.2 38 81.6
Lj5g0008266 Lotus japonicus HOM05D002236 ORTHO05D002341 1.5e-09 65.9 36 86.1
Hund06452 Selenicereus undatus HOM05D002236 ORTHO05D002341 1.5e-09 65.9 43 76.7
Aa31LG1G20170 Aethionema arabicum HOM05D002236 ORTHO05D002341 2.0e-09 65.5 65 53.8
Aa31LG6G16880 Aethionema arabicum HOM05D002236 ORTHO05D002341 2.0e-09 65.5 38 81.6
ClCG02G003870 Citrullus lanatus HOM05D002236 ORTHO05D002341 2.0e-09 65.5 44 72.7
Haze_02091 Corylus avellana HOM05D002236 ORTHO05D002341 2.0e-09 65.5 49 67.3
CsaV3_7G001260 Cucumis sativus L. HOM05D002236 ORTHO05D002341 2.0e-09 65.5 66 54.5
Peaxi162Scf00362g00434 Petunia axillaris HOM05D002236 ORTHO05D002341 2.0e-09 65.5 42 76.2
Actinidia21481 Actinidia chinensis HOM05D002236 ORTHO05D002341 2.5e-09 65.1 50 68.0
MBI05_g34737_MAGBIO Magnolia biondii HOM05D002236 ORTHO05D002341 2.5e-09 65.1 55 60.0
Nn6g31894 Nelumbo nucifera HOM05D002236 ORTHO05D002341 2.5e-09 65.1 37 83.8
vmacro02295 Vaccinium macrocarpon HOM05D002236 ORTHO05D002341 2.5e-09 65.1 74 50.0
HPP92_022384 Vanilla planifolia HOM05D002236 ORTHO05D002341 2.5e-09 65.1 42 73.8
AT4G38480 Arabidopsis thaliana HOM05D002236 ORTHO05D002341 3.3e-09 64.7 45 73.3
MELO3C013326.2 Cucumis melo HOM05D002236 ORTHO05D002341 3.3e-09 64.7 65 53.8
Glyma.10G284000 Glycine max HOM05D002236 ORTHO05D002341 3.3e-09 64.7 37 81.1
GSVIVG01023967001 Vitis vinifera HOM05D002236 ORTHO05D002341 3.3e-09 64.7 43 72.1
Sc18g0006220 Simmondsia chinensis HOM05D002236 ORTHO05D002341 4.3e-09 64.3 36 86.1
Ah.01g008120 Amaranthus hybridus HOM05D002236 ORTHO05D002341 5.7e-09 63.9 48 68.8
AL7G10340 Arabidopsis lyrata HOM05D002236 ORTHO05D002341 5.7e-09 63.9 45 73.3
AUR62010003 Chenopodium quinoa HOM05D002236 ORTHO05D002341 7.4e-09 63.5 78 48.7
Oeu029653.1 Olea europaea HOM05D002236 ORTHO05D002341 7.4e-09 63.5 40 72.5
TAR376G0644 Trochodendron aralioides HOM05D002236 ORTHO05D002341 7.4e-09 63.5 37 81.1
Aa31LG8G8250 Aethionema arabicum HOM05D002236 ORTHO05D002341 9.7e-09 63.2 45 71.1
Ah.01g023330 Amaranthus hybridus HOM05D002236 ORTHO05D002341 9.7e-09 63.2 77 46.8
MSTRG.27629 Avicennia marina HOM05D002236 ORTHO05D002341 9.7e-09 63.2 67 52.2
Thhalv10025111m.g Eutrema salsugineum HOM05D002236 ORTHO05D002341 9.7e-09 63.2 38 76.3
Glyma.20G105700 Glycine max HOM05D002236 ORTHO05D002341 1.3e-08 62.8 48 72.9
unitig_52.g17181 Utricularia gibba HOM05D002236 ORTHO05D002341 1.3e-08 62.8 40 72.5
Lsat_1_v5_gn_3_47500 Lactuca sativa HOM05D002236 ORTHO05D002341 1.7e-08 62.4 35 85.7
PSO170G4971 Papaver somniferum HOM05D002236 ORTHO05D002341 1.7e-08 62.4 50 60.0
Carub.0007s0036 Capsella rubella HOM05D002236 ORTHO05D002341 2.2e-08 62.0 41 75.6
CARHR294200 Cardamine hirsuta HOM05D002236 ORTHO05D002341 2.2e-08 62.0 36 77.8
ECA234G2527 Erigeron canadensis HOM05D002236 ORTHO05D002341 2.2e-08 62.0 64 56.2
THA.LOC104824749 Tarenaya hassleriana HOM05D002236 ORTHO05D002341 2.2e-08 62.0 51 60.8
MBI08_g38602_MAGBIO Magnolia biondii HOM05D002236 ORTHO05D002341 2.8e-08 61.6 49 61.2
Nitab4.5_0001215g0010 Nicotiana tabacum HOM05D002236 ORTHO05D002341 2.8e-08 61.6 52 63.5
Eucgr.I01460 Eucalyptus grandis HOM05D002236 ORTHO05D002341 6.3e-08 60.5 36 80.6
Oeu024925.1 Olea europaea HOM05D002236 ORTHO05D002341 6.3e-08 60.5 33 87.9
AUR62012991 Chenopodium quinoa HOM05D002236 ORTHO05D002341 8.2e-08 60.1 55 56.4
Potri.004G178700 Populus trichocarpa HOM05D002236 ORTHO05D002341 8.2e-08 60.1 55 56.4
SGA_v2.0_scaffold32G13313 Striga asiatica HOM05D002236 ORTHO05D002341 8.2e-08 60.1 62 54.8
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 8.2e-08 60.1 53 54.7
PSO210G0462 Papaver somniferum HOM05D002236 ORTHO05D002341 2.4e-07 58.5 37 73.0
SEGI_10308 Sequoiadendron giganteum HOM05D002236 ORTHO05D002341 3.1e-07 58.2 40 67.5
CDE09G0215 Ceratophyllum demersum HOM05D002236 ORTHO05D002341 4.1e-07 57.8 37 73.0
Zm00001eb353130 Zea mays HOM05D002236 ORTHO05D002341 6.9e-07 57.0 43 67.4
Zm00001eb393900 Zea mays HOM05D002236 ORTHO05D002341 6.9e-07 57.0 43 67.4
HanXRQChr17g0544141 Helianthus annuus HOM05D002236 ORTHO05D002341 1.2e-06 56.2 33 81.8
Lsat_1_v5_gn_4_70001 Lactuca sativa HOM05D002236 ORTHO05D002341 1.2e-06 56.2 33 75.8
Os10g0544500 Oryza sativa ssp. japonica HOM05D002236 ORTHO05D002341 1.2e-06 56.2 48 58.3
BcaC01g00232 Brassica carinata HOM05D002236 ORTHO05D002341 1.5e-06 55.8 34 73.5
PGR102G2556 Punica granatum HOM05D002236 ORTHO05D002341 1.5e-06 55.8 40 65.0
Sabra04G0120300 Salix brachista HOM05D002236 ORTHO05D002341 1.5e-06 55.8 37 70.3
Oeu062272.2 Olea europaea HOM05D002236 ORTHO05D002341 2.0e-06 55.5 43 60.5
PSO063G4571 Papaver somniferum HOM05D002236 ORTHO05D002341 2.0e-06 55.5 43 58.1
PGR142G4377 Punica granatum HOM05D002236 ORTHO05D002341 2.0e-06 55.5 68 47.1
ATR0661G157 Amborella trichopoda HOM05D002236 ORTHO05D002341 2.6e-06 55.1 36 72.2
Ciclev10028345m.g Citrus clementina HOM05D002236 ORTHO05D002341 2.6e-06 55.1 66 43.9
Gohir.A08G008000 Gossypium hirsutum HOM05D002236 ORTHO05D002341 3.4e-06 54.7 41 65.9
Ah.01g002350 Amaranthus hybridus HOM05D002236 ORTHO05D002341 4.5e-06 54.3 39 61.5
COL.COLO4_25270 Corchorus olitorius HOM05D002236 ORTHO05D002341 4.5e-06 54.3 40 65.0
Nn2g10651 Nelumbo nucifera HOM05D002236 ORTHO05D002341 4.5e-06 54.3 39 61.5
Atru.chr3.3721 Acer truncatum HOM05D002236 ORTHO05D002341 5.9e-06 53.9 65 46.2
Atru.chr3.3726 Acer truncatum HOM05D002236 ORTHO05D002341 5.9e-06 53.9 65 46.2
Cpa.g.sc139.59 Carica papaya HOM05D002236 ORTHO05D002341 5.9e-06 53.9 38 63.2
Gohir.D08G018000 Gossypium hirsutum HOM05D002236 ORTHO05D002341 5.9e-06 53.9 38 65.8
Gorai.004G012500 Gossypium raimondii HOM05D002236 ORTHO05D002341 5.9e-06 53.9 38 65.8
MBI05_g18070_MAGBIO Magnolia biondii HOM05D002236 ORTHO05D002341 5.9e-06 53.9 39 61.5
SEGI_20167 Sequoiadendron giganteum HOM05D002236 ORTHO05D002341 5.9e-06 53.9 36 72.2
ATR1159G026 Amborella trichopoda HOM05D002236 ORTHO05D002341 7.7e-06 53.5 39 64.1


User provided reference genes

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