Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G15120 Aethionema arabicum HOM05D007940 ORTHO05D010046 1.8e-44 182.2 89 100.0
Carub.0001s2958 Capsella rubella HOM05D007940 ORTHO05D010046 2.7e-37 158.3 87 85.1
AL1G49310 Arabidopsis lyrata HOM05D007940 ORTHO05D010046 6.1e-37 157.1 87 85.1
Sp1g27000 Schrenkiella parvula HOM05D007940 ORTHO05D010046 5.2e-36 154.1 87 83.9
A09p35060 Brassica napus HOM05D007940 ORTHO05D010046 6.7e-36 153.7 85 85.9
BraA09t39037Z Brassica rapa HOM05D007940 ORTHO05D010046 6.7e-36 153.7 85 85.9
AT1G31175 Arabidopsis thaliana HOM05D007940 ORTHO05D010046 8.8e-36 153.3 87 82.8
BcaB07g32779 Brassica carinata HOM05D007940 ORTHO05D010046 4.4e-35 151.0 85 83.5
CARHR030670 Cardamine hirsuta HOM05D007940 ORTHO05D010046 4.4e-35 151.0 87 82.8
Thhalv10009859m.g Eutrema salsugineum HOM05D007940 ORTHO05D010046 5.7e-35 150.6 87 81.6
BcaC05g27148 Brassica carinata HOM05D007940 ORTHO05D010046 3.7e-34 147.9 85 83.5
BcaC09g51575 Brassica carinata HOM05D007940 ORTHO05D010046 3.7e-34 147.9 85 83.5
BolC1t01151H Brassica oleracea HOM05D007940 ORTHO05D010046 3.7e-34 147.9 85 83.5
THA.LOC104798551 Tarenaya hassleriana HOM05D007940 ORTHO05D010046 5.5e-30 134.0 86 75.6
Migut.M01978 Erythranthe guttata HOM05D007940 ORTHO05D010046 1.8e-28 129.0 82 70.7
QL11p017779 Quercus lobata HOM05D007940 ORTHO05D010046 6.7e-28 127.1 80 73.8
FAN16G1222 Fragaria x ananassa HOM05D007940 ORTHO05D010046 3.3e-27 124.8 80 72.5
RcHm_v2.0_Chr5g0020061 Rosa chinensis HOM05D007940 ORTHO05D010046 3.3e-27 124.8 79 73.4
TWI38G0312 Tripterygium wilfordii HOM05D007940 ORTHO05D010046 3.3e-27 124.8 79 69.6
Sabra15G0137900 Salix brachista HOM05D007940 ORTHO05D010046 4.4e-27 124.4 83 66.3
ClCG01G009440 Citrullus lanatus HOM05D007940 ORTHO05D010046 1.3e-26 122.9 79 70.9
SGA_v2.0_scaffold298G47684 Striga asiatica HOM05D007940 ORTHO05D010046 1.3e-26 122.9 82 67.1
Sed0008509 Sechium edule HOM05D007940 ORTHO05D010046 1.7e-26 122.5 79 69.6
Potri.015G121500 Populus trichocarpa HOM05D007940 ORTHO05D010046 2.8e-26 121.7 80 67.5
Prupe.4G111600 Prunus persica HOM05D007940 ORTHO05D010046 2.8e-26 121.7 82 70.7
Atru.chr10.309 Acer truncatum HOM05D007940 ORTHO05D010046 3.7e-26 121.3 79 67.1
SalBow6G6284 Salvia bowleyana HOM05D007940 ORTHO05D010046 3.7e-26 121.3 79 67.1
SalBow8G3130 Salvia bowleyana HOM05D007940 ORTHO05D010046 3.7e-26 121.3 79 67.1
Cc09_g06150 Coffea canephora HOM05D007940 ORTHO05D010046 4.8e-26 120.9 79 70.9
MD05G1252500 Malus domestica HOM05D007940 ORTHO05D010046 4.8e-26 120.9 82 68.3
CSS0023427 Camellia sinensis var. sinensis HOM05D007940 ORTHO05D010046 1.4e-25 119.4 73 74.0
MELO3C021755.2 Cucumis melo HOM05D007940 ORTHO05D010046 1.8e-25 119.0 79 68.4
Eucgr.D01043 Eucalyptus grandis HOM05D007940 ORTHO05D010046 1.8e-25 119.0 82 65.9
Phvul.009G252500 Phaseolus vulgaris HOM05D007940 ORTHO05D010046 1.8e-25 119.0 81 64.2
Cfa019394 Carpinus fangiana HOM05D007940 ORTHO05D010046 3.1e-25 118.2 83 63.9
Lalb_Chr07g0188831 Lupinus albus HOM05D007940 ORTHO05D010046 3.1e-25 118.2 81 67.9
Sc16g0011710 Simmondsia chinensis HOM05D007940 ORTHO05D010046 3.1e-25 118.2 79 67.1
Ah.06g193510 Amaranthus hybridus HOM05D007940 ORTHO05D010046 4.1e-25 117.9 79 65.8
Hma1.2p1_0040F.1_g025155 Hydrangea macrophylla HOM05D007940 ORTHO05D010046 4.1e-25 117.9 82 65.9
Oeu008726.1 Olea europaea HOM05D007940 ORTHO05D010046 4.1e-25 117.9 82 63.4
MD10G1233500 Malus domestica HOM05D007940 ORTHO05D010046 5.3e-25 117.5 79 68.4
Thecc.06G142100 Theobroma cacao HOM05D007940 ORTHO05D010046 5.3e-25 117.5 80 66.2
Nn7g38154 Nelumbo nucifera HOM05D007940 ORTHO05D010046 9.1e-25 116.7 79 65.8
TPR.G22024 Trifolium pratense HOM05D007940 ORTHO05D010046 9.1e-25 116.7 78 69.2
FAN21G0368 Fragaria x ananassa HOM05D007940 ORTHO05D010046 1.6e-24 115.9 80 71.2
Glyma.15G146300 Glycine max HOM05D007940 ORTHO05D010046 4.5e-24 114.4 82 63.4
Psat1g156840 Pisum sativum HOM05D007940 ORTHO05D010046 5.9e-24 114.0 78 66.7
DCAR_003782 Daucus carota HOM05D007940 ORTHO05D010046 7.7e-24 113.6 79 63.3
Duzib235G0199 Durio zibethinus HOM05D007940 ORTHO05D010046 1.3e-23 112.8 80 63.8
Ca_01891_v3 Cicer arietinum L. HOM05D007940 ORTHO05D010046 2.2e-23 112.1 78 64.1
Medtr2g435250 Medicago truncatula HOM05D007940 ORTHO05D010046 2.9e-23 111.7 78 66.7
Actinidia33707 Actinidia chinensis HOM05D007940 ORTHO05D010046 3.8e-23 111.3 79 62.0
Lsat_1_v5_gn_5_23140 Lactuca sativa HOM05D007940 ORTHO05D010046 3.8e-23 111.3 79 59.5
Manes.16G056500 Manihot esculenta HOM05D007940 ORTHO05D010046 3.8e-23 111.3 79 63.3
HanXRQChr04g0109371 Helianthus annuus HOM05D007940 ORTHO05D010046 5.0e-23 110.9 79 58.2
Solyc11g020710.2 Solanum lycopersicum HOM05D007940 ORTHO05D010046 5.0e-23 110.9 79 64.6
Sopen11g010730 Solanum pennellii HOM05D007940 ORTHO05D010046 5.0e-23 110.9 79 64.6
Manes.16G057400 Manihot esculenta HOM05D007940 ORTHO05D010046 6.5e-23 110.5 79 63.3
EL10Ac4g10315 Beta vulgaris HOM05D007940 ORTHO05D010046 4.2e-22 107.8 73 67.1
CANSAT35G1488 Cannabis sativa HOM05D007940 ORTHO05D010046 9.4e-22 106.7 82 61.0
Aqoxy3G00719 Aquilegia oxysepala HOM05D007940 ORTHO05D010046 8.0e-21 103.6 79 58.2
Os07g0567500 Oryza sativa ssp. japonica HOM05D007940 ORTHO05D010046 5.7e-19 97.4 80 60.0
HPP92_017565 Vanilla planifolia HOM05D007940 ORTHO05D010046 9.8e-19 96.7 79 59.5
Gohir.D05G147600 Gossypium hirsutum HOM05D007940 ORTHO05D010046 4.8e-18 94.4 79 55.7
COL.COLO4_30989 Corchorus olitorius HOM05D007940 ORTHO05D010046 6.3e-18 94.0 84 51.2
Ciclev10017318m.g Citrus clementina HOM05D007940 ORTHO05D010046 1.8e-17 92.4 76 57.9
Zm00001eb107160 Zea mays HOM05D007940 ORTHO05D010046 2.4e-17 92.0 80 55.0
Gorai.009G151700 Gossypium raimondii HOM05D007940 ORTHO05D010046 7.0e-17 90.5 79 54.4
Gohir.D05G147732 Gossypium hirsutum HOM05D007940 ORTHO05D010046 1.6e-16 89.4 79 53.2
MBI02_g13338_MAGBIO Magnolia biondii HOM05D007940 ORTHO05D010046 7.7e-16 87.0 71 57.7
PSO675G1966 Papaver somniferum HOM05D007940 ORTHO05D010046 7.7e-16 87.0 58 65.5
CsaV3_1G046330 Cucumis sativus L. HOM05D007940 ORTHO05D010046 2.1e-13 79.0 48 66.7
TAR624G1282 Trochodendron aralioides HOM05D007940 ORTHO05D010046 2.8e-10 68.6 50 60.0
Mapoly0019s0110 Marchantia polymorpha HOM05D007940 ORTHO05D010046 4.9e-10 67.8 82 43.9
CBR_g28534 Chara braunii HOM05D007940 ORTHO05D010046 4.5e-08 61.2 87 37.9
SMO347G0336 Selaginella moellendorffii HOM05D007940 ORTHO05D010046 4.5e-08 61.2 79 39.2
FAN20G1268 Fragaria x ananassa HOM05D007940 ORTHO05D010046 1.5e-06 56.2 35 71.4
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 2.5e-06 55.5 35 71.4
FAN12G0891 Fragaria x ananassa HOM05D007940 ORTHO05D010046 2.5e-06 55.5 36 66.7
FAN24G2461 Fragaria x ananassa HOM05D000188 ORTHO05D000362 2.5e-06 55.5 36 66.7
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 2.5e-06 55.5 36 66.7


User provided reference genes

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