Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 7.6e-118 427.2 215 100.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.3e-105 384.8 212 93.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.1e-103 380.2 212 92.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.4e-102 375.2 214 92.5
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.4e-102 375.2 211 92.9
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 8.5e-101 370.5 212 90.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 5.5e-100 367.9 215 88.4
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 7.2e-100 367.5 213 89.7
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.7e-99 365.5 214 88.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.1e-99 364.4 212 88.7
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 7.9e-99 364.0 213 88.3
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-98 362.8 213 87.8
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.8e-98 362.8 213 87.8
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-98 362.1 211 88.6
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 5.1e-98 361.3 214 87.4
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.1e-97 360.1 213 87.3
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.5e-97 359.0 214 88.3
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 7.4e-97 357.5 212 87.3
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 7.9e-91 337.4 213 82.6
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-89 332.8 199 86.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.1e-84 317.0 211 75.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 5.5e-84 314.7 211 75.4
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.1e-83 311.2 211 74.9
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.7e-78 295.8 217 71.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.3e-77 293.5 218 71.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.3e-77 293.5 209 71.3
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 8.5e-77 290.8 221 70.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.0e-74 283.9 211 67.8
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 6.8e-74 281.2 211 68.2
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.5e-73 280.0 216 68.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.0e-73 279.6 213 67.6
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.4e-73 278.5 215 67.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.7e-73 278.1 213 67.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-71 273.9 204 70.1
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-71 273.5 204 69.6
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.1e-71 272.3 223 66.4
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.1e-71 272.3 208 70.2
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 9.1e-71 270.8 204 69.6
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-70 270.0 221 67.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.0e-70 269.6 214 66.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.0e-70 269.6 193 72.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.5e-70 268.9 203 71.9
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.3e-69 266.9 264 56.4
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.2e-69 266.2 203 70.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 8.5e-69 264.2 204 69.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 8.5e-69 264.2 153 85.6
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.2e-68 262.3 195 70.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 7.2e-68 261.2 209 65.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.2e-67 260.4 210 68.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.1e-67 259.6 209 66.5
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 3.6e-67 258.8 213 65.7
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 8.0e-67 257.7 209 69.9
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.0e-67 257.7 210 68.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.8e-66 256.5 184 71.7
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.8e-66 256.5 202 67.8
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.8e-66 256.5 211 67.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.3e-66 256.1 214 66.8
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 3.0e-66 255.8 213 64.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 3.0e-66 255.8 158 79.1
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.0e-66 255.8 193 69.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 4.0e-66 255.4 214 65.0
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 5.2e-66 255.0 211 66.4
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 8.8e-66 254.2 210 65.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.2e-65 253.8 214 66.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.2e-65 253.8 219 64.8
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.2e-65 253.8 205 68.3
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-65 253.8 205 68.3
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-65 253.8 205 68.3
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.2e-65 253.8 204 67.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.5e-65 253.4 189 68.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.6e-65 252.7 209 68.9
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.4e-65 252.3 209 66.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.4e-65 252.3 204 67.6
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.4e-65 252.3 204 67.6
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.8e-65 250.8 210 62.4
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-64 250.4 205 67.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.3e-64 250.4 218 64.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-64 250.0 205 67.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.2e-64 249.6 211 65.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.2e-64 249.6 205 67.3
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-64 249.6 155 80.6
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 2.2e-64 249.6 218 64.2
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.9e-64 248.4 211 65.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.9e-64 248.4 213 65.3
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 6.3e-64 248.1 201 67.2
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.1e-63 247.3 200 64.5
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.1e-63 247.3 215 61.9
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.4e-63 246.9 163 74.8
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.8e-63 246.5 216 62.5
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.8e-63 246.5 160 76.9
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 211 64.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.5e-62 241.9 188 68.6
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.9e-61 239.2 215 64.2
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 8.6e-61 237.7 156 74.4
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 2.5e-60 236.1 213 62.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.3e-60 235.3 215 60.5
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.3e-60 234.6 205 62.9
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.3e-60 234.6 211 62.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.1e-59 231.5 151 77.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.0e-59 231.1 162 71.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.0e-58 228.8 230 57.8
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.0e-57 226.5 193 61.7
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 6.4e-56 221.5 225 53.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.1e-55 220.7 195 61.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.8e-55 219.9 227 56.8
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.4e-55 218.4 188 63.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.6e-54 216.9 193 61.7
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.6e-54 216.9 186 65.6
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.3e-53 213.0 120 85.0
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.0e-53 212.6 218 55.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.0e-53 211.8 200 60.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.1e-52 210.7 209 56.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.1e-52 210.7 299 44.8
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 5.6e-52 208.4 191 57.1
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 9.5e-52 207.6 212 56.1
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.0e-49 199.9 175 62.3
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.7e-48 196.8 187 59.9
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 1.7e-48 196.8 156 64.1
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.2e-48 196.4 158 63.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.0e-46 188.3 217 51.6
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.0e-46 188.3 217 51.6
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.3e-45 187.2 207 52.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.3e-45 187.2 101 90.1
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 5.6e-44 181.8 120 74.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 9.5e-44 181.0 145 66.9
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.6e-43 179.1 120 72.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.1e-42 177.6 222 50.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.9e-39 166.8 218 49.5
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.1e-37 158.7 93 79.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.1e-35 153.3 106 67.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.1e-34 151.0 122 59.8
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 4.0e-34 149.1 130 56.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.0e-34 149.1 122 59.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.4e-33 146.0 112 59.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 9.9e-33 144.4 80 86.2
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.2e-31 139.4 134 52.2
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.0e-29 134.4 92 67.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.4e-25 119.0 80 72.5
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.2e-22 110.9 126 53.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.5e-20 104.0 142 45.1
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 9.9e-17 91.3 71 66.2
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 5.1e-13 79.0 138 40.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.4e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 5.5e-07 58.9 64 54.7


User provided reference genes

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