Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.0e-194 681.8 371 100.0
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.0e-170 602.1 369 88.1
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 8.7e-170 600.5 369 87.8
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 8.7e-170 600.5 369 88.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 5.6e-169 597.8 369 87.5
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 6.2e-168 594.3 369 87.5
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-167 593.2 369 86.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.4e-167 592.4 369 86.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 3.1e-167 592.0 369 86.2
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-166 589.7 369 86.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.5e-166 589.7 369 85.6
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.4e-166 588.6 369 85.4
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 5.8e-166 587.8 369 85.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 5.8e-166 587.8 369 85.9
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 7.6e-166 587.4 368 86.4
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 7.6e-166 587.4 369 85.9
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 3.8e-165 585.1 369 85.4
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 3.8e-165 585.1 369 85.4
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-164 583.2 366 86.6
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-164 583.2 366 86.6
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-164 582.4 371 85.7
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 6.0e-163 577.8 366 86.6
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 7.9e-163 577.4 368 86.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.9e-161 572.8 371 83.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 2.5e-161 572.4 368 85.3
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.6e-134 482.6 367 73.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 7.7e-134 481.1 369 73.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.0e-133 480.7 366 73.2
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.0e-133 480.7 368 73.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.0e-133 480.7 367 73.3
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 3.2e-132 475.7 296 86.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 5.5e-132 474.9 368 73.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 9.4e-132 474.2 367 72.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.7e-131 472.6 363 74.7
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-130 469.9 359 74.9
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 3.0e-130 469.2 342 76.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.9e-130 468.8 372 72.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.1e-130 468.4 363 74.1
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.1e-129 467.2 371 72.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.5e-129 466.8 371 71.2
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.0e-129 466.5 371 72.0
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.3e-129 465.7 359 73.8
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.3e-129 465.7 376 69.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 7.4e-129 464.5 361 74.0
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 7.4e-129 464.5 376 69.1
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 9.7e-129 464.2 376 68.9
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.3e-128 463.8 365 71.5
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.7e-128 463.4 375 68.8
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.2e-128 463.0 370 69.2
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.8e-128 462.6 377 68.4
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 6.3e-128 461.5 373 71.3
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 4.1e-127 458.8 342 75.4
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 7.0e-127 458.0 370 70.5
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 7.0e-127 458.0 371 70.4
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 9.1e-127 457.6 379 69.4
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.1e-127 457.6 367 69.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-126 457.2 336 74.7
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.2e-126 457.2 364 70.1
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.0e-126 456.4 357 72.0
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.6e-126 456.1 374 70.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 2.6e-126 456.1 374 69.8
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 3.5e-126 455.7 372 68.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 4.5e-126 455.3 374 69.5
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 5.9e-126 454.9 365 70.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 7.7e-126 454.5 368 70.7
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 7.7e-126 454.5 327 74.6
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.2e-125 453.0 351 72.6
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 3.8e-125 452.2 373 69.2
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 3.8e-125 452.2 324 75.3
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.5e-124 450.3 374 68.2
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.5e-124 449.5 336 75.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 3.2e-124 449.1 290 85.5
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.2e-124 448.7 349 71.3
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 5.5e-124 448.4 315 81.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 7.2e-124 448.0 370 68.4
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 7.2e-124 448.0 352 71.3
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.4e-124 447.6 378 68.5
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 9.4e-124 447.6 370 70.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 9.4e-124 447.6 365 69.3
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.7e-123 446.0 329 72.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.7e-123 445.3 370 67.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 6.1e-123 444.9 369 69.9
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.0e-122 444.1 371 67.7
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.8e-122 443.4 338 72.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.0e-122 442.6 339 70.5
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.0e-122 442.2 345 72.2
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 4.0e-122 442.2 322 74.8
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.6e-121 439.5 353 68.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.6e-121 439.5 323 74.0
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 3.3e-121 439.1 375 66.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 7.5e-121 438.0 327 73.7
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 9.7e-121 437.6 368 67.9
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 9.7e-121 437.6 375 66.9
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.3e-120 437.2 352 71.9
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.7e-120 436.8 326 72.4
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.2e-120 436.4 359 69.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.8e-120 436.0 347 70.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.7e-120 435.6 348 72.1
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 3.7e-120 435.6 368 67.9
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.8e-120 435.3 363 68.9
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 4.8e-120 435.3 368 67.9
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 4.8e-120 435.3 371 68.2
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.3e-120 434.9 375 68.5
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.3e-120 434.9 363 67.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 8.2e-120 434.5 360 67.8
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.8e-119 433.3 327 72.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.4e-119 433.0 360 67.8
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 4.1e-119 432.2 367 62.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 9.1e-119 431.0 354 68.1
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.7e-118 427.9 373 65.4
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.0e-117 427.6 321 73.2
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.3e-117 427.2 341 71.3
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.7e-117 426.8 324 71.6
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 3.8e-117 425.6 326 71.8
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 9.8e-113 411.0 368 64.9
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 2.2e-112 409.8 331 69.2
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.8e-111 406.8 368 66.0
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.9e-109 399.4 331 67.4
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.0e-106 391.0 328 66.2
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.3e-106 389.8 243 89.3
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.8e-106 388.3 375 60.3
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 7.5e-105 384.8 367 60.2
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.3e-104 384.0 365 63.0
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.7e-101 373.6 326 63.2
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 6.1e-99 365.2 364 58.2
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.0e-93 347.8 333 60.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.6e-92 342.0 390 53.3
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 7.3e-92 341.7 243 77.8
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.3e-84 316.2 297 57.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.0e-81 307.0 203 75.4
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 2.6e-81 306.6 319 56.1
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.4e-79 300.8 322 55.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-79 300.4 329 55.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 5.6e-76 288.9 323 55.1
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.0e-69 266.5 240 60.0
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 2.4e-55 220.3 209 59.3
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.3e-51 208.0 260 49.2
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 6.2e-43 179.1 168 58.3
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.4e-42 177.9 144 62.5
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 3.8e-40 169.9 128 68.8
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.1e-34 151.8 164 57.9
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.0e-29 135.2 102 69.6
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 6.7e-29 132.5 90 71.1
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-26 124.4 78 83.3
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 9.1e-26 122.1 95 68.4
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.2e-25 121.7 128 52.3
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 1.7e-24 117.9 79 77.2
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.0e-24 116.3 112 53.6
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 6.1e-22 109.4 95 62.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-20 104.0 66 81.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.7e-19 101.3 126 46.0
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.2e-19 100.9 78 64.1
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.2e-17 95.1 86 58.1
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.2e-14 85.1 324 29.3
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.2e-14 85.1 282 29.4
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.0e-13 80.5 63 71.4
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 6.7e-13 79.3 272 32.7
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.1e-10 70.1 49 69.4
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.0e-10 69.3 49 67.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.2e-09 68.6 56 62.5
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 48 68.8
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-09 67.0 191 28.8
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.9e-09 66.2 49 67.3
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 7.7e-09 65.9 66 59.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.7e-09 65.9 67 52.2
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-08 64.7 70 55.7
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.7e-08 64.7 76 47.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.7e-08 64.7 175 34.9
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.2e-08 64.3 43 72.1
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.5e-07 60.8 49 61.2
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 5.5e-07 59.7 43 69.8
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.1e-06 57.8 67 71.6


User provided reference genes

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