Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.4e-52 207.6 100 100.0
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.5e-12 76.3 70 48.6
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.6e-12 75.5 70 48.6
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.5e-12 74.7 83 43.4
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 5.8e-12 74.3 83 43.4
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.2e-11 72.4 74 51.4
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 2.2e-11 72.4 83 42.2
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 4.9e-11 71.2 78 43.6
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 3.2e-10 68.6 83 39.8
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 9.3e-10 67.0 76 40.8
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.2e-09 66.6 64 48.4
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 35.6
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.6e-09 66.2 63 47.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.6e-09 66.2 81 39.5
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.1e-09 65.9 83 41.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.1e-09 65.9 79 38.0
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 3.5e-09 65.1 78 41.0
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 3.5e-09 65.1 66 42.4
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.5e-09 65.1 66 42.4
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 4.6e-09 64.7 63 46.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 6.0e-09 64.3 79 36.7
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 7.9e-09 63.9 81 38.3
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-08 63.5 72 43.1
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-08 63.5 72 43.1
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.0e-08 63.5 72 43.1
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.0e-08 63.5 62 50.0
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.3e-08 63.2 63 46.0
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.8e-08 62.8 71 43.7
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.8e-08 62.8 71 38.0
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.8e-08 62.8 79 39.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.3e-08 62.4 79 38.0
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.3e-08 62.4 74 41.9
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.3e-08 62.4 78 39.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.3e-08 62.4 83 34.9
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.3e-08 62.4 78 39.7
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.3e-08 62.4 78 39.7
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.3e-08 62.4 68 42.6
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 3.0e-08 62.0 65 43.1
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 3.0e-08 62.0 82 40.2
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 3.0e-08 62.0 81 39.5
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 5.1e-08 61.2 65 44.6
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 5.1e-08 61.2 62 43.5
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 6.7e-08 60.8 79 41.8
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 8.7e-08 60.5 62 45.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 8.7e-08 60.5 79 35.4
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.1e-07 60.1 79 36.7
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.1e-07 60.1 80 40.0
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 1.1e-07 60.1 80 41.2
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.5e-07 59.7 84 38.1
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.5e-07 59.7 79 36.7
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.5e-07 59.7 63 41.3
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.9e-07 59.3 63 41.3
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.5e-07 58.9 65 38.5
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.5e-07 58.9 65 38.5
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 3.3e-07 58.5 79 34.2
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 4.3e-07 58.2 63 42.9
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.3e-07 58.2 79 39.2
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 5.7e-07 57.8 64 42.2
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 7.4e-07 57.4 64 39.1
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 7.4e-07 57.4 66 40.9
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 7.4e-07 57.4 79 40.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 7.4e-07 57.4 84 38.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 9.6e-07 57.0 80 40.0
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.3e-06 56.6 81 37.0
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.6e-06 56.2 81 37.0
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.6e-06 56.2 51 47.1
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.6e-06 56.2 89 33.7
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 2.1e-06 55.8 77 36.4
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 2.8e-06 55.5 60 43.3
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 3.7e-06 55.1 85 36.5
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.8e-06 54.7 78 38.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.8e-06 54.7 78 38.5
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 8.2e-06 53.9 73 34.2


User provided reference genes

Program Settings