Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 0.0e+00 1076.2 563 100.0
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 3.6e-260 901.4 572 84.6
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 1.2e-258 896.3 568 85.2
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 2.0e-258 895.6 568 84.9
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 3.4e-258 894.8 569 84.2
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 2.9e-257 891.7 566 85.0
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 4.9e-257 891.0 569 84.2
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 3.2e-256 888.3 568 85.0
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 3.2e-256 888.3 570 83.9
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 3.9e-254 881.3 568 84.2
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 7.1e-248 860.5 571 82.8
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 1.2e-236 823.2 536 83.6
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 7.6e-226 787.3 581 75.2
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 3.7e-204 715.3 564 66.8
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.3e-201 706.8 561 67.7
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 2.1e-199 699.5 491 73.9
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 1.8e-198 696.4 506 71.3
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 1.8e-198 696.4 506 71.3
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 8.2e-196 687.6 517 68.5
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 4.1e-195 685.3 521 68.3
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 6.9e-195 684.5 498 69.5
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 9.1e-195 684.1 506 69.2
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 2.6e-194 682.6 548 65.9
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 2.6e-194 682.6 512 69.5
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 4.5e-194 681.8 498 70.3
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 4.5e-194 681.8 497 70.8
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 4.5e-194 681.8 523 66.9
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 1.3e-193 680.2 497 70.8
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 2.2e-193 679.5 553 65.1
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 6.5e-193 677.9 497 70.4
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 1.9e-192 676.4 506 69.6
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 2.1e-191 672.9 529 65.4
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 7.9e-191 671.0 506 68.8
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 8.8e-190 667.5 563 62.5
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 3.3e-189 665.6 505 67.7
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 2.8e-188 662.5 555 63.8
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 1.4e-187 660.2 538 64.7
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.4e-187 659.4 497 69.4
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 7.0e-187 657.9 560 61.6
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 9.1e-187 657.5 495 68.9
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 1.5e-186 656.8 511 65.4
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 5.9e-186 654.8 544 63.8
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.3e-185 653.7 507 66.5
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 1.3e-185 653.7 509 66.8
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 1.7e-185 653.3 506 65.8
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 2.2e-185 652.9 558 63.3
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 1.1e-184 650.6 498 66.9
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.9e-184 649.8 505 67.5
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 9.4e-184 647.5 509 65.2
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 3.0e-182 642.5 497 66.2
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 1.1e-181 640.6 510 66.1
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 3.3e-181 639.0 512 65.2
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 5.7e-181 638.3 503 64.0
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 3.7e-180 635.6 494 66.0
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 4.8e-180 635.2 519 64.5
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 2.6e-178 629.4 556 61.3
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 1.3e-177 627.1 512 64.1
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 1.7e-177 626.7 530 63.0
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 2.9e-177 625.9 512 64.8
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 9.4e-176 620.9 438 73.3
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 5.2e-174 615.1 524 62.4
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 2.0e-173 613.2 509 62.7
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 1.4e-171 607.1 512 63.3
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 2.4e-171 606.3 484 64.5
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 3.1e-171 605.9 507 61.1
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 4.1e-171 605.5 505 62.6
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 7.0e-171 604.7 482 64.1
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 8.5e-169 597.8 547 59.6
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 1.9e-168 596.7 477 64.4
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 1.0e-166 590.9 505 62.0
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 2.2e-164 583.2 479 62.8
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 6.3e-164 581.6 469 65.0
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 9.1e-163 577.8 496 62.5
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 2.7e-162 576.2 490 62.0
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 5.0e-161 572.0 512 57.4
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 2.5e-160 569.7 546 58.8
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 4.9e-156 555.4 511 58.3
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.3e-153 547.4 564 55.7
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 1.2e-151 540.8 473 60.7
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 1.2e-151 540.8 521 54.9
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 1.3e-148 530.8 437 62.7
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 2.2e-148 530.0 491 58.2
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 2.7e-146 523.1 511 54.6
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 1.7e-145 520.4 550 53.1
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 2.3e-145 520.0 405 65.9
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 3.7e-140 502.7 520 55.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.5e-136 490.0 518 53.5
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 8.9e-134 481.5 508 51.8
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 9.2e-131 471.5 567 49.9
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 3.5e-130 469.5 506 50.8
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 7.3e-128 461.8 488 50.0
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 9.9e-125 451.4 317 73.5
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 1.7e-124 450.7 317 73.2
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 4.6e-122 442.6 500 49.6
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 1.1e-112 411.4 345 58.6
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 6.7e-105 385.6 231 89.6
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 2.3e-97 360.5 512 43.0
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 6.9e-94 349.0 271 72.3
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 9.7e-64 248.8 561 34.4
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.2e-58 231.9 235 54.5
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.8e-55 220.7 253 50.6
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 4.7e-50 203.4 250 46.8
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 1.0e-49 202.2 142 73.9
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.7e-47 194.9 199 49.7
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 8.3e-47 192.6 214 47.2
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 2.9e-44 184.1 203 47.3
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 4.7e-34 150.2 184 50.0
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 6.2e-34 149.8 171 51.5
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.9e-30 138.3 112 62.5
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 3.7e-23 114.0 70 88.6
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.5e-16 92.0 59 79.7
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 5.6e-11 73.6 115 41.7
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 1.2e-10 72.4 115 40.9


User provided reference genes

Program Settings