Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.5e-153 546.2 282 100.0
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.2e-139 500.0 282 89.4
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.8e-138 496.1 283 89.4
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 7.4e-137 490.7 283 89.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 6.2e-136 487.6 282 87.6
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.1e-135 485.3 283 89.4
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 9.0e-135 483.8 281 87.2
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 5.5e-132 474.6 282 86.2
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.3e-130 469.2 283 84.5
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.3e-130 469.2 283 84.5
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.9e-130 468.4 283 85.5
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.9e-130 468.4 283 85.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.9e-130 468.4 283 85.5
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 6.7e-130 467.6 284 85.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 6.7e-130 467.6 286 86.4
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.5e-129 465.7 281 83.3
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.6e-123 444.9 289 79.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.6e-123 444.9 289 79.9
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.2e-102 377.1 283 69.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 7.7e-102 374.4 282 70.2
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 7.7e-102 374.4 282 70.2
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.3e-101 373.6 284 68.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.3e-101 373.6 284 67.3
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.2e-101 372.9 284 70.8
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.9e-100 369.8 265 72.8
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.5e-100 369.4 230 78.7
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.2e-100 369.0 256 72.3
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 9.4e-100 367.5 279 69.5
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.2e-99 367.1 281 68.7
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.2e-99 367.1 230 78.3
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.6e-99 366.7 254 71.3
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.6e-99 366.7 285 68.1
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 2.7e-99 365.9 284 68.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 4.7e-99 365.2 202 91.6
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 4.7e-99 365.2 279 68.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.7e-99 365.2 287 67.9
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-98 364.0 252 71.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.3e-98 362.8 285 65.3
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.0e-98 362.5 251 74.1
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 3.0e-98 362.5 285 65.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.7e-98 361.3 268 69.4
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-97 360.5 268 69.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.5e-97 360.1 247 74.9
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.5e-97 360.1 250 73.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.0e-97 359.8 268 69.4
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.6e-97 359.4 229 77.3
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 3.3e-97 359.0 250 74.4
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 3.3e-97 359.0 242 76.0
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.7e-97 358.2 281 68.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 9.7e-97 357.5 284 66.2
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.7e-96 356.7 250 70.8
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.2e-96 356.3 288 64.9
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.2e-96 356.3 264 67.4
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.8e-96 355.9 232 76.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.8e-96 355.9 275 65.8
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.8e-96 355.9 229 77.3
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.7e-96 355.5 231 76.2
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.7e-96 355.5 250 71.6
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.7e-96 355.5 233 76.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.8e-96 355.1 230 76.5
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.3e-96 354.8 257 69.3
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 8.2e-96 354.4 232 76.7
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.1e-95 354.0 231 74.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.1e-95 354.0 279 66.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.1e-95 354.0 237 75.9
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.1e-95 354.0 283 65.7
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.4e-95 353.6 283 65.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.3e-95 351.7 232 75.4
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 7.0e-95 351.3 230 74.8
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.1e-95 350.9 231 75.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 9.1e-95 350.9 237 74.7
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.2e-94 350.5 229 75.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.6e-94 350.1 306 62.7
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.6e-94 350.1 283 65.0
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.0e-94 349.7 243 73.3
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.6e-94 349.4 314 60.5
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.5e-94 349.0 283 65.0
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.9e-94 348.2 257 67.3
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 5.9e-94 348.2 236 74.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.0e-93 347.4 284 65.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.2e-93 346.3 260 68.5
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.2e-93 346.3 233 74.2
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.2e-93 346.3 228 75.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 2.9e-93 345.9 228 72.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 5.0e-93 345.1 236 73.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.5e-92 343.6 228 73.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 4.2e-92 342.0 221 76.5
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 9.4e-92 340.9 254 67.7
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 9.4e-92 340.9 228 72.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.2e-91 340.5 237 70.5
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 3.6e-91 339.0 221 76.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 6.1e-91 338.2 237 71.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.0e-91 337.8 237 70.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.4e-90 337.0 282 61.7
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.2e-89 334.0 265 66.0
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.6e-89 332.8 236 69.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.4e-89 332.0 262 64.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.4e-89 332.0 228 72.4
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 7.5e-89 331.3 240 71.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 3.7e-88 328.9 252 65.9
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-87 327.0 268 65.3
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.8e-87 326.6 254 65.4
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.7e-86 322.8 231 70.1
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.5e-86 322.4 237 66.7
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.0e-85 318.5 235 69.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.5e-84 315.1 230 70.4
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 7.2e-84 314.7 272 59.2
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.1e-83 313.2 294 59.5
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 6.1e-83 311.6 230 69.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 3.0e-82 309.3 199 77.9
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.0e-82 309.3 230 67.8
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 5.2e-82 308.5 247 63.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 4.4e-81 305.4 231 64.5
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 7.5e-81 304.7 282 60.6
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.7e-80 302.4 246 62.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 6.3e-80 301.6 199 73.4
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.0e-77 294.3 229 66.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.3e-77 293.9 199 74.4
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.7e-77 293.5 199 72.9
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.9e-76 290.0 199 70.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.8e-74 283.5 243 60.9
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.0e-74 282.7 191 73.8
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.0e-74 282.7 199 71.9
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 3.4e-73 279.3 200 69.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 4.9e-72 275.4 225 64.4
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 5.4e-71 271.9 238 60.5
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 4.6e-70 268.9 233 60.5
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 5.9e-70 268.5 236 59.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.9e-70 268.5 216 63.9
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 8.6e-69 264.6 187 69.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.9e-64 249.6 167 74.3
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.0e-61 238.8 185 67.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 6.6e-61 238.4 240 53.3
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.5e-60 236.5 231 55.0
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.5e-57 227.3 191 62.3
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-56 223.8 268 48.5
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-51 207.6 146 69.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.4e-48 195.3 136 69.9
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 7.1e-47 191.8 146 65.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.0e-45 188.0 209 50.7
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-43 180.3 131 69.5
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.0e-42 176.0 131 69.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-39 167.5 131 66.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.1e-37 159.1 158 56.3
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-35 152.9 102 74.5
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-35 152.9 102 74.5
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.2e-33 147.9 117 67.5
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 4.6e-30 136.0 123 55.3
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 6.2e-27 125.6 74 83.8
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-26 123.6 74 82.4
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.1e-26 123.2 74 82.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 4.0e-26 122.9 74 82.4
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 5.3e-26 122.5 157 43.9
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.5e-25 120.9 74 79.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 7.6e-25 118.6 203 35.0
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.9e-20 104.0 70 72.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 5.6e-20 102.4 90 58.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.8e-19 100.1 64 76.6
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-16 91.7 63 74.6
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 6.5e-16 89.0 66 68.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 6.5e-16 89.0 64 70.3
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.9e-13 79.7 64 65.6
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-12 77.4 46 84.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.3e-11 74.7 44 81.8
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.4e-10 71.2 44 75.0
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.8e-10 70.9 61 60.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.0e-10 68.6 64 56.2
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 1.2e-09 68.2 37 78.4
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 1.2e-09 68.2 37 78.4
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.5e-07 59.3 209 27.3
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 6.1e-06 55.8 49 57.1
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 7.9e-06 55.5 33 78.8


User provided reference genes

Program Settings