Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G13990 Aethionema arabicum HOM05D000032 ORTHO05D007444 3.4e-33 144.4 74 100.0
Aa31LG2G14020 Aethionema arabicum HOM05D000032 ORTHO05D002561 1.1e-26 122.9 66 92.4
Aa31LG2G14100 Aethionema arabicum HOM05D000032 ORTHO05D007444 1.1e-26 122.9 66 92.4
AT1G31970 Arabidopsis thaliana HOM05D000032 ORTHO05D007444 2.4e-26 121.7 67 91.0
Carub.0001s3031 Capsella rubella HOM05D000032 ORTHO05D007444 6.9e-26 120.2 64 92.2
Eucgr.D02628 Eucalyptus grandis HOM05D000032 ORTHO05D007444 1.2e-25 119.4 66 89.4
AL1G46050 Arabidopsis lyrata HOM05D000032 ORTHO05D007444 2.6e-25 118.2 66 89.4
Thhalv10007300m.g Eutrema salsugineum HOM05D000032 ORTHO05D007444 2.6e-25 118.2 66 89.4
THA.LOC104798505 Tarenaya hassleriana HOM05D000032 ORTHO05D007444 4.4e-25 117.5 66 86.4
TAR629G2151 Trochodendron aralioides HOM05D000032 ORTHO05D007444 5.8e-25 117.1 64 87.5
Hma1.2p1_0803F.1_g220720 Hydrangea macrophylla HOM05D000032 ORTHO05D007444 1.3e-24 115.9 64 85.9
Psat2g139400 Pisum sativum HOM05D000032 ORTHO05D007444 1.3e-24 115.9 66 86.4
Sp1g27680 Schrenkiella parvula HOM05D000032 ORTHO05D007444 1.3e-24 115.9 66 87.9
Medtr5g027840 Medicago truncatula HOM05D000032 ORTHO05D007444 1.7e-24 115.5 64 89.1
COL.COLO4_16900 Corchorus olitorius HOM05D000032 ORTHO05D007444 2.9e-24 114.8 66 86.4
Duzib068G1248 Durio zibethinus HOM05D000032 ORTHO05D007444 3.8e-24 114.4 66 84.8
GSVIVG01011527001 Vitis vinifera HOM05D000032 ORTHO05D007444 6.4e-24 113.6 64 82.8
Atru.chr6.1559 Acer truncatum HOM05D000032 ORTHO05D007444 1.1e-23 112.8 64 85.9
BcaC07g37639 Brassica carinata HOM05D000032 ORTHO05D007444 1.1e-23 112.8 66 86.4
BraA08t32938Z Brassica rapa HOM05D000032 ORTHO05D007444 1.1e-23 112.8 66 86.4
Gohir.D03G177200 Gossypium hirsutum HOM05D000032 ORTHO05D007444 1.1e-23 112.8 66 84.8
Gorai.003G186400 Gossypium raimondii HOM05D000032 ORTHO05D007444 1.1e-23 112.8 66 84.8
A09p34220 Brassica napus HOM05D000032 ORTHO05D007444 1.9e-23 112.1 66 84.8
C05p31310 Brassica napus HOM05D000032 ORTHO05D007444 1.9e-23 112.1 66 84.8
BraA09t38970Z Brassica rapa HOM05D000032 ORTHO05D007444 1.9e-23 112.1 66 84.8
Gohir.A03G000021 Gossypium hirsutum HOM05D000032 ORTHO05D007444 1.9e-23 112.1 66 84.8
Aqoxy3G02129 Aquilegia oxysepala HOM05D000032 ORTHO05D007444 2.4e-23 111.7 64 81.2
CDE12G0512 Ceratophyllum demersum HOM05D000032 ORTHO05D007444 2.4e-23 111.7 66 81.8
RcHm_v2.0_Chr7g0212761 Rosa chinensis HOM05D000032 ORTHO05D007444 3.2e-23 111.3 64 85.9
QL12p000251 Quercus lobata HOM05D000032 ORTHO05D007444 4.2e-23 110.9 65 81.5
BcaC05g27222 Brassica carinata HOM05D000032 ORTHO05D007444 5.4e-23 110.5 66 83.3
BolC5t31854H Brassica oleracea HOM05D000032 ORTHO05D007444 5.4e-23 110.5 66 83.3
PSO782G4822 Papaver somniferum HOM05D000032 ORTHO05D007444 5.4e-23 110.5 64 82.8
BcaB07g32858 Brassica carinata HOM05D000032 ORTHO05D007444 7.1e-23 110.2 64 85.9
TPR.G24223 Trifolium pratense HOM05D000032 ORTHO05D007444 7.1e-23 110.2 64 84.4
Manes.17G010800 Manihot esculenta HOM05D000032 ORTHO05D007444 9.3e-23 109.8 66 84.8
Potri.003G098800 Populus trichocarpa HOM05D000032 ORTHO05D007444 9.3e-23 109.8 64 89.1
CANSAT21G0070 Cannabis sativa HOM05D000032 ORTHO05D007444 1.2e-22 109.4 66 80.3
CANSAT21G1764 Cannabis sativa HOM05D000032 ORTHO05D007444 1.2e-22 109.4 66 80.3
PGR031G3543 Punica granatum HOM05D000032 ORTHO05D007444 1.2e-22 109.4 66 80.3
Lalb_Chr09g0325341 Lupinus albus HOM05D000032 ORTHO05D007444 1.6e-22 109.0 66 83.3
Actinidia18142 Actinidia chinensis HOM05D000032 ORTHO05D007444 2.1e-22 108.6 66 80.3
CSS0027581 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007444 2.1e-22 108.6 64 82.8
Ca_25155_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007444 2.1e-22 108.6 62 83.9
Cpa.g.sc16.14 Carica papaya HOM05D000032 ORTHO05D007444 2.7e-22 108.2 62 83.9
PSO063G7107 Papaver somniferum HOM05D000032 ORTHO05D007444 2.7e-22 108.2 64 81.2
Phvul.002G133300 Phaseolus vulgaris HOM05D000032 ORTHO05D007444 2.7e-22 108.2 66 80.3
MSTRG.1786 Avicennia marina HOM05D000032 ORTHO05D007444 3.5e-22 107.8 66 80.3
A08p09400 Brassica napus HOM05D000032 ORTHO05D007444 3.5e-22 107.8 63 84.1
Sabra03G0066800 Salix brachista HOM05D000032 ORTHO05D007444 3.5e-22 107.8 64 85.9
vmacro14213 Vaccinium macrocarpon HOM05D000032 ORTHO05D007444 3.5e-22 107.8 66 83.3
VMungo1215G3152 Vigna mungo HOM05D000032 ORTHO05D007444 3.5e-22 107.8 64 81.2
arahy.Tifrunner.gnm1.ann1.61HMI4 Arachis hypogaea HOM05D000032 ORTHO05D007444 4.6e-22 107.5 61 83.6
arahy.Tifrunner.gnm1.ann1.ZA5ISV Arachis hypogaea HOM05D000032 ORTHO05D007444 4.6e-22 107.5 61 83.6
Ciclev10000690m.g Citrus clementina HOM05D000032 ORTHO05D007444 4.6e-22 107.5 64 84.4
Haze_08121 Corylus avellana HOM05D000032 ORTHO05D007444 4.6e-22 107.5 66 78.8
HPP92_020807 Vanilla planifolia HOM05D000032 ORTHO05D007444 6.0e-22 107.1 66 81.8
TWI81G0473 Tripterygium wilfordii HOM05D000032 ORTHO05D007444 7.8e-22 106.7 62 80.6
CiPaw.11G100700 Carya illinoinensis HOM05D000032 ORTHO05D007444 1.0e-21 106.3 66 78.8
ClCG07G002210 Citrullus lanatus HOM05D000032 ORTHO05D007444 1.0e-21 106.3 64 81.2
MELO3C026716.2 Cucumis melo HOM05D000032 ORTHO05D007444 1.3e-21 105.9 64 81.2
CsaV3_3G030450 Cucumis sativus L. HOM05D000032 ORTHO05D007444 1.3e-21 105.9 64 81.2
CARHR031300 Cardamine hirsuta HOM05D000032 ORTHO05D007444 2.3e-21 105.1 66 78.8
Migut.E01328 Erythranthe guttata HOM05D000032 ORTHO05D007444 2.3e-21 105.1 66 80.3
Rhsim07G0134700 Rhododendron simsii HOM05D000032 ORTHO05D007444 2.3e-21 105.1 66 81.8
Sed0012143 Sechium edule HOM05D000032 ORTHO05D007444 2.3e-21 105.1 64 79.7
Hund11148 Selenicereus undatus HOM05D000032 ORTHO05D007444 2.3e-21 105.1 64 79.7
Ciclev10003217m.g Citrus clementina HOM05D000032 ORTHO05D007444 3.0e-21 104.8 62 83.9
FvH4_5g23490 Fragaria vesca HOM05D000032 ORTHO05D007444 3.0e-21 104.8 62 80.6
FAN04G1401 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.0e-21 104.8 62 80.6
FAN13G1431 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.0e-21 104.8 62 80.6
FAN18G0754 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.0e-21 104.8 62 80.6
FAN18G3167 Fragaria x ananassa HOM05D000032 ORTHO05D007444 3.0e-21 104.8 62 80.6
Nitab4.5_0000543g0180 Nicotiana tabacum HOM05D000032 ORTHO05D007444 3.0e-21 104.8 66 77.3
Nitab4.5_0003568g0010 Nicotiana tabacum HOM05D000032 ORTHO05D007444 3.0e-21 104.8 66 77.3
Mapoly0045s0142 Marchantia polymorpha HOM05D000032 ORTHO05D007444 3.9e-21 104.4 59 84.7
AUR62007381 Chenopodium quinoa HOM05D000032 ORTHO05D007444 6.6e-21 103.6 64 78.1
AUR62018607 Chenopodium quinoa HOM05D000032 ORTHO05D007444 6.6e-21 103.6 64 78.1
Lalb_Chr16g0380911 Lupinus albus HOM05D000032 ORTHO05D007444 1.1e-20 102.8 66 80.3
Glyma.01G010400 Glycine max HOM05D000032 ORTHO05D007444 2.5e-20 101.7 64 75.0
Glyma.09G210700 Glycine max HOM05D000032 ORTHO05D007444 2.5e-20 101.7 64 75.0
Prupe.5G024900 Prunus persica HOM05D000032 ORTHO05D007444 2.5e-20 101.7 64 79.7
Ah.12g055740 Amaranthus hybridus HOM05D000032 ORTHO05D007444 3.3e-20 101.3 64 76.6
ECA246G2233 Erigeron canadensis HOM05D000032 ORTHO05D007444 3.3e-20 101.3 66 78.8
Lsat_1_v5_gn_1_13001 Lactuca sativa HOM05D000032 ORTHO05D007444 3.3e-20 101.3 63 76.2
Lj2g0008608 Lotus japonicus HOM05D000032 ORTHO05D007444 3.3e-20 101.3 66 77.3
DCAR_008202 Daucus carota HOM05D000032 ORTHO05D007444 4.3e-20 100.9 66 78.8
unitig_747.g21360 Utricularia gibba HOM05D000032 ORTHO05D007444 4.3e-20 100.9 64 76.6
MD00G1068700 Malus domestica HOM05D000032 ORTHO05D007444 5.6e-20 100.5 64 82.8
Pp3c21_4750 Physcomitrium patens HOM05D000032 ORTHO05D007444 5.6e-20 100.5 59 83.1
EL10Ac5g11976 Beta vulgaris HOM05D000032 ORTHO05D007444 7.3e-20 100.1 64 76.6
TWI60G0743 Tripterygium wilfordii HOM05D000032 ORTHO05D007444 7.3e-20 100.1 62 79.0
Cc08_g03910 Coffea canephora HOM05D000032 ORTHO05D007444 9.6e-20 99.8 66 74.2
Oeu017102.2 Olea europaea HOM05D000032 ORTHO05D007444 9.6e-20 99.8 66 75.8
SMO141G0072 Selaginella moellendorffii HOM05D000032 ORTHO05D007444 1.3e-19 99.4 59 81.4
ATR0829G024 Amborella trichopoda HOM05D000032 ORTHO05D007444 1.6e-19 99.0 63 77.8
Lj7A125T31 Lonicera japonica HOM05D000032 ORTHO05D007444 1.6e-19 99.0 64 73.4
Os07g0301200 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007444 1.6e-19 99.0 64 73.4
Sc01g0006040 Simmondsia chinensis HOM05D000032 ORTHO05D007444 1.6e-19 99.0 62 77.4
HanXRQChr17g0537721 Helianthus annuus HOM05D000032 ORTHO05D007444 2.1e-19 98.6 64 78.1
SEGI_15594 Sequoiadendron giganteum HOM05D000032 ORTHO05D007444 2.8e-19 98.2 59 81.4
Solyc08g076200.4 Solanum lycopersicum HOM05D000032 ORTHO05D007444 2.8e-19 98.2 66 72.7
Sopen08g024840 Solanum pennellii HOM05D000032 ORTHO05D007444 2.8e-19 98.2 66 72.7
PGSC0003DMG400009295 Solanum tuberosum HOM05D000032 ORTHO05D007444 2.8e-19 98.2 66 72.7
Peaxi162Scf00879g00110 Petunia axillaris HOM05D000032 ORTHO05D007444 3.6e-19 97.8 64 71.9
CAN.G773.22 Capsicum annuum HOM05D000032 ORTHO05D007444 4.8e-19 97.4 66 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2969 Anthoceros agrestis HOM05D000032 ORTHO05D007444 1.1e-18 96.3 58 75.9
Zm00001eb305590 Zea mays HOM05D000032 ORTHO05D007444 4.0e-18 94.4 62 71.0
MD06G1023800 Malus domestica HOM05D000032 ORTHO05D007444 5.8e-17 90.5 64 75.0
SGA_v2.0_scaffold144G35861 Striga asiatica HOM05D003080 ORTHO05D003601 9.9e-17 89.7 56 78.6
CBR_g12371 Chara braunii HOM05D000032 ORTHO05D007444 1.7e-16 89.0 59 72.9
FAN08G0685 Fragaria x ananassa HOM05D000032 ORTHO05D007444 1.1e-15 86.3 66 66.7
Sed0016578 Sechium edule HOM05D000032 ORTHO05D007444 1.9e-15 85.5 84 57.1
Cre12.g539100 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D007444 6.0e-14 80.5 59 71.2
MCO13G566 Micromonas commoda HOM05D000032 ORTHO05D007444 1.9e-12 75.5 54 72.2
SHI07205 Sapria himalayana HOM05D000032 ORTHO05D007444 1.4e-07 59.3 33 84.8
PRCOL_00004922 Prasinoderma coloniale HOM05D000032 ORTHO05D007444 5.5e-07 57.4 58 53.4
Cfa012545 Carpinus fangiana HOM05D000032 ORTHO05D007444 3.5e-06 54.7 32 81.2
Cfa025117 Carpinus fangiana HOM05D000032 ORTHO05D007444 6.0e-06 53.9 52 55.8
HanXRQChr17g0537701 Helianthus annuus HOM05D000032 ORTHO05D007444 7.9e-06 53.5 34 70.6


User provided reference genes

Program Settings