Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.5e-110 402.1 201 100.0
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.4e-84 316.6 204 80.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.7e-83 311.2 204 77.9
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.2e-82 309.3 201 79.6
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 7.0e-81 304.3 203 78.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 6.5e-79 297.7 203 76.8
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 8.2e-74 280.8 202 73.8
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 8.2e-74 280.8 202 73.8
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.4e-73 280.0 202 73.3
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.4e-73 280.0 202 75.2
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.4e-73 280.0 202 75.2
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.1e-73 278.9 202 71.3
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 9.1e-73 277.3 202 74.8
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.8e-66 255.0 203 65.5
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.2e-64 250.4 202 69.3
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.3e-63 246.9 203 65.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.3e-63 246.1 201 67.7
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.9e-63 245.7 201 66.7
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.9e-62 243.0 201 65.2
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 4.2e-62 241.9 201 65.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.1e-61 239.6 204 64.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 8.0e-61 237.7 199 60.8
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.3e-60 236.1 202 60.4
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.0e-59 233.0 204 59.3
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.5e-59 231.1 204 61.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.3e-58 230.3 203 62.6
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.3e-58 230.3 203 62.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.2e-58 229.6 203 62.1
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.2e-58 229.6 203 62.1
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.2e-58 229.6 203 62.1
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.2e-58 229.6 207 58.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.9e-58 228.4 202 58.9
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.3e-58 228.0 204 60.3
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.3e-58 227.6 204 59.8
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-57 227.3 204 59.8
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.4e-57 226.9 204 59.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.8e-57 226.5 200 60.0
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.4e-57 226.1 204 59.3
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.4e-57 226.1 204 59.8
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 5.4e-57 224.9 204 58.3
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 5.4e-57 224.9 204 60.8
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 9.2e-57 224.2 204 60.3
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.2e-56 223.8 204 59.3
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 5.9e-56 221.5 204 58.3
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.0e-55 220.7 202 56.9
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.3e-55 220.3 211 57.8
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.7e-55 219.9 207 57.0
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.3e-55 219.5 205 58.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 2.9e-55 219.2 204 58.3
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.8e-55 218.8 206 57.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.9e-54 216.5 201 55.7
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 9.5e-54 214.2 203 55.7
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.8e-53 212.6 218 54.1
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.8e-53 212.6 204 56.9
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 6.1e-53 211.5 204 57.8
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.1e-53 211.5 207 55.6
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.8e-52 209.9 206 55.8
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.3e-52 209.5 206 54.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 3.1e-52 209.1 202 55.9
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.8e-52 208.0 207 57.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.0e-51 206.5 206 54.4
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 2.0e-51 206.5 207 56.0
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 2.6e-51 206.1 198 56.1
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.4e-51 205.7 188 54.8
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.4e-51 205.3 201 57.7
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 4.4e-51 205.3 203 55.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.8e-51 204.9 203 55.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.8e-51 204.9 203 55.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 7.5e-51 204.5 207 54.1
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 8.3e-50 201.1 201 53.2
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 8.3e-50 201.1 201 53.2
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.1e-49 200.7 201 53.2
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.0e-49 198.0 205 55.1
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.0e-49 198.0 205 55.1
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 9.2e-49 197.6 202 54.5
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.2e-48 197.2 205 53.2
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.0e-48 196.4 206 53.4
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.6e-48 195.3 206 52.4
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 4.6e-48 195.3 209 52.2
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 7.8e-48 194.5 201 54.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.3e-47 193.7 197 55.8
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 2.3e-47 193.0 204 53.9
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.3e-47 193.0 204 52.5
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.0e-47 192.6 206 53.4
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 6.6e-47 191.4 203 51.2
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.5e-46 190.3 201 52.7
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.5e-46 190.3 205 52.7
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 2.5e-46 189.5 210 52.9
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 4.3e-46 188.7 198 48.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.3e-46 188.7 201 51.2
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.6e-46 188.3 201 55.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 5.6e-46 188.3 208 50.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 7.3e-46 188.0 200 52.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.2e-45 187.2 203 52.2
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.6e-45 186.8 202 53.5
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.1e-45 186.4 153 62.7
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.1e-45 186.4 201 53.7
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.6e-45 185.7 198 49.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 4.7e-45 185.3 214 48.6
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.4e-44 183.7 198 49.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-44 183.3 192 55.2
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.8e-44 183.3 201 51.2
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.1e-44 182.6 200 49.0
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.0e-44 182.2 205 51.2
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 5.2e-44 181.8 198 47.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.8e-44 181.4 205 52.7
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 8.9e-44 181.0 205 52.2
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.2e-43 180.6 218 49.5
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 2.0e-43 179.9 202 52.5
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.6e-43 179.5 205 50.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 3.4e-43 179.1 227 47.6
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.4e-43 178.7 202 51.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.5e-43 177.9 276 42.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 7.5e-43 177.9 198 49.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 7.5e-43 177.9 198 49.5
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 9.8e-43 177.6 199 51.3
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.3e-42 177.2 201 50.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.7e-42 176.8 205 49.3
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.7e-42 176.8 205 52.7
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.9e-42 176.0 205 49.8
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 4.9e-42 175.3 151 60.3
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-41 172.9 202 50.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 5.4e-41 171.8 201 49.3
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.1e-40 169.9 118 71.2
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.7e-40 169.5 199 48.7
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 6.0e-40 168.3 263 41.4
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.3e-39 167.2 178 51.7
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.7e-39 166.8 197 47.2
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.7e-39 166.8 210 51.9
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 5.1e-39 165.2 197 48.2
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 6.6e-39 164.9 201 44.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.2e-37 160.6 108 74.1
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.2e-37 160.6 203 47.3
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.6e-37 159.1 122 69.7
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 6.2e-37 158.3 209 45.0
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.2e-35 154.1 330 34.8
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.7e-34 150.2 203 45.8
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 3.7e-34 149.1 204 45.1
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 5.4e-33 145.2 206 43.2
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 5.4e-33 145.2 199 40.2
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 7.1e-33 144.8 89 74.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.3e-31 139.8 187 45.5
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 6.6e-31 138.3 195 42.6
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.1e-28 129.4 89 66.3
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.5e-27 127.1 179 44.1
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 2.0e-27 126.7 89 67.4
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.6e-27 126.3 131 49.6
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 3.2e-25 119.4 158 46.8
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.2e-25 119.0 158 45.6
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 5.4e-25 118.6 166 43.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 5.4e-25 118.6 101 57.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 7.8e-24 114.8 203 38.4
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.0e-23 114.4 217 34.6
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 3.9e-23 112.5 166 42.2
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 6.6e-23 111.7 154 43.5
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.5e-22 110.5 159 42.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 8.1e-21 104.8 161 45.3
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 4.4e-19 99.0 138 44.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 3.9e-15 85.9 73 60.3
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.1e-14 84.3 95 50.5
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.5e-14 84.0 99 50.5
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.5e-14 84.0 99 50.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.6e-13 80.5 56 71.4
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-13 80.1 99 49.5
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 2.1e-13 80.1 99 49.5
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.1e-12 77.8 40 90.0
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 6.9e-12 75.1 84 52.4
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.2e-11 74.3 122 41.8
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.0e-11 73.6 44 75.0
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.0e-11 73.6 44 75.0
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 2.6e-11 73.2 203 33.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 2.2e-10 70.1 49 63.3
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.1e-09 67.8 84 42.9
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.2e-08 64.3 90 40.0
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 1.5e-06 57.4 83 41.0


User provided reference genes

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