Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.4e-97 359.8 207 100.0
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 7.4e-70 267.7 207 70.0
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.8e-69 265.8 207 72.0
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.4e-62 241.9 207 62.8
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 9.7e-62 240.7 207 66.2
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 5.3e-60 235.0 209 66.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.2e-59 233.8 213 72.8
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 7.7e-59 231.1 211 65.4
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.0e-55 220.7 207 65.2
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.0e-55 220.7 207 65.2
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 5.7e-54 214.9 207 58.0
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 5.7e-54 214.9 207 58.0
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 7.5e-54 214.5 207 58.0
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 9.8e-54 214.2 202 60.4
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 9.8e-54 214.2 202 60.4
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 9.8e-54 214.2 202 60.4
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.4e-52 209.5 203 60.1
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 7.0e-52 208.0 219 56.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.9e-49 199.9 214 57.5
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.2e-49 198.7 213 58.2
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.7e-45 186.8 214 55.1
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-41 173.3 205 52.2
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.9e-41 173.3 205 52.2
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 7.3e-41 171.4 208 51.9
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-40 170.6 210 50.5
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.4e-38 162.5 203 49.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.7e-37 160.2 206 48.5
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 4.9e-37 158.7 205 48.3
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 6.4e-37 158.3 228 46.1
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 8.3e-37 157.9 233 46.8
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.1e-36 155.6 212 46.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 5.4e-36 155.2 224 44.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.2e-35 154.1 206 49.0
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-35 154.1 229 46.3
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.0e-35 153.3 233 45.1
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.0e-34 148.7 232 46.1
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.3e-33 144.8 231 44.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.3e-33 144.8 231 44.6
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-32 144.1 237 39.7
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.1e-31 139.4 239 43.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 3.1e-31 139.4 241 42.3
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 6.8e-31 138.3 252 47.6
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 2.0e-30 136.7 216 47.7
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.6e-30 136.3 237 43.5
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.5e-30 134.8 226 42.9
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 9.8e-30 134.4 232 46.6
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 9.8e-30 134.4 235 42.1
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.7e-29 133.7 231 40.7
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 2.9e-29 132.9 245 41.2
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 2.9e-29 132.9 245 41.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.1e-28 131.0 225 45.3
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-28 131.0 226 42.0
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-28 131.0 226 38.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.1e-28 131.0 234 43.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.4e-28 130.6 231 40.3
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.4e-28 130.6 241 41.5
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 9.2e-28 127.9 240 40.8
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.2e-27 127.5 240 40.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 3.5e-27 125.9 237 42.2
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 4.6e-27 125.6 243 38.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 7.8e-27 124.8 239 42.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 7.8e-27 124.8 239 42.7
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.8e-27 124.8 231 44.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-26 124.0 242 41.7
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.3e-26 124.0 244 41.8
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.3e-26 124.0 237 40.5
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 8.6e-26 121.3 222 41.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 8.6e-26 121.3 240 39.2
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.1e-25 120.9 236 42.4
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 4.3e-25 119.0 218 37.2
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 9.5e-25 117.9 234 42.3
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 9.5e-25 117.9 236 39.4
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.1e-24 116.7 209 40.7
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.8e-24 116.3 227 38.8
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.8e-24 116.3 229 42.4
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.7e-24 115.5 249 44.2
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 6.2e-24 115.2 238 42.4
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-23 113.6 227 42.3
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.1e-23 112.8 227 42.3
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.1e-23 112.8 253 40.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.0e-23 112.5 240 44.6
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 5.2e-23 112.1 255 39.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.2e-23 112.1 212 40.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 6.8e-23 111.7 248 37.9
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-22 110.9 246 34.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.2e-22 110.9 226 42.9
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.5e-22 110.5 246 34.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.6e-22 109.8 246 34.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 4.4e-22 109.0 243 39.5
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 4.4e-22 109.0 246 41.5
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.8e-22 108.6 248 41.1
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 7.5e-22 108.2 206 43.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.9e-22 107.8 222 40.1
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.9e-22 107.8 246 34.6
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-21 107.5 231 34.6
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.7e-21 107.1 208 40.4
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.9e-21 105.5 245 35.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 8.3e-21 104.8 254 39.4
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 8.3e-21 104.8 237 37.6
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.4e-20 104.0 251 44.6
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 2.4e-20 103.2 241 35.3
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 3.2e-20 102.8 227 38.8
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 4.1e-20 102.4 224 45.5
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-19 100.9 241 38.6
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.1e-19 100.1 217 39.6
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.0e-18 97.8 231 32.0
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-18 97.4 238 35.3
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.7e-18 97.1 216 38.0
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.7e-18 97.1 254 35.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.7e-18 97.1 242 31.8
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.1e-17 94.4 218 32.1
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.5e-17 94.0 225 34.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.5e-17 93.2 202 38.6
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.3e-17 92.8 136 42.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 7.3e-17 91.7 217 31.3
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.2e-16 90.9 245 31.4
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.4e-15 86.7 208 33.2
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 3.1e-15 86.3 236 34.3
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-14 84.0 253 34.0
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 4.4e-14 82.4 239 29.3
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.9e-14 81.3 249 36.1
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.4e-13 78.2 191 38.7
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.1e-12 77.8 197 34.0
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 4.2e-12 75.9 202 37.1
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.1e-12 75.1 198 32.3
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.2e-11 74.3 272 33.8
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.1e-11 73.6 191 34.0
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 3.5e-11 72.8 243 37.4
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 4.6e-11 72.4 233 38.6
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.1e-10 68.9 144 47.2
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.6e-10 68.6 221 28.5
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.1e-09 67.8 209 31.1
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.9e-09 67.0 251 27.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 4.3e-09 65.9 262 34.4
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 7.3e-09 65.1 230 26.5
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 2.1e-08 63.5 232 26.7
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.8e-08 63.2 95 48.4
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.7e-08 62.4 198 29.3
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.4e-07 60.8 84 44.0
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.1e-07 59.7 138 34.1
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 5.3e-07 58.9 244 25.8
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.2e-06 57.8 179 33.0
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.5e-06 57.4 206 23.8
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.0e-06 57.0 194 33.0


User provided reference genes

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