Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 2.0e-180 635.6 304 100.0
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.0e-140 502.7 323 77.4
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 5.9e-140 501.1 323 77.1
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 9.4e-138 493.8 324 76.9
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 7.9e-137 490.7 323 75.2
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 1.4e-136 490.0 327 75.8
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 5.1e-136 488.0 319 75.9
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-135 486.5 327 75.5
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.5e-135 486.5 327 75.5
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.6e-135 485.7 324 75.3
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 7.4e-135 484.2 325 76.0
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 6.3e-134 481.1 327 74.6
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.8e-133 479.6 328 74.7
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 3.1e-133 478.8 326 75.5
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 5.9e-132 474.6 326 74.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 5.9e-132 474.6 324 75.0
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-130 469.9 325 74.5
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 4.1e-125 451.8 313 74.8
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 4.5e-124 448.4 322 69.6
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.5e-122 443.4 336 70.2
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.6e-116 423.3 321 66.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 5.9e-116 421.4 321 66.0
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.3e-115 420.2 321 65.4
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 5.5e-114 414.8 320 64.1
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 7.2e-114 414.5 320 65.0
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 7.2e-114 414.5 316 64.9
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 9.4e-114 414.1 321 64.8
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 3.6e-113 412.1 314 65.3
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 6.1e-113 411.4 321 63.9
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 6.1e-113 411.4 314 64.0
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.8e-112 409.8 325 67.7
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-112 409.8 325 67.7
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.3e-112 409.5 309 64.1
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 5.2e-112 408.3 318 63.5
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 6.8e-112 407.9 319 62.7
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 8.8e-112 407.5 323 61.6
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 8.8e-112 407.5 304 66.1
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.2e-111 407.1 321 64.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.5e-111 406.8 323 62.8
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.5e-111 406.8 316 63.0
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.5e-111 406.8 314 63.7
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 2.6e-111 406.0 318 63.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.6e-111 406.0 316 63.6
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.4e-111 405.2 323 63.2
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 5.7e-111 404.8 318 62.6
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 7.5e-111 404.4 314 63.4
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 7.5e-111 404.4 319 62.4
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 9.8e-111 404.1 323 62.8
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.7e-110 403.3 318 63.8
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.2e-110 402.9 314 64.3
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.2e-110 402.9 327 63.0
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.2e-110 402.9 318 62.9
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.8e-110 402.5 323 62.2
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.8e-110 401.7 319 62.7
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 8.3e-110 401.0 317 62.5
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.1e-109 400.6 320 61.9
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.4e-109 400.2 316 64.6
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.8e-109 399.8 322 62.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.4e-109 399.4 322 62.1
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.1e-109 399.1 284 69.0
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 4.1e-109 398.7 323 61.3
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 4.1e-109 398.7 323 60.4
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 9.1e-109 397.5 310 61.6
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 9.1e-109 397.5 320 62.5
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.2e-108 397.1 320 61.9
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-108 396.7 316 63.0
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 2.0e-108 396.4 319 61.4
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 2.7e-108 396.0 321 63.9
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 5.9e-108 394.8 308 63.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.3e-107 393.7 322 61.2
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 6.6e-107 391.3 323 61.0
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.5e-106 390.2 315 61.3
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.9e-106 389.8 319 61.4
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.5e-106 389.4 319 61.1
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 2.5e-106 389.4 298 64.8
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 4.2e-106 388.7 323 59.8
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 4.2e-106 388.7 296 63.5
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 6.1e-105 384.8 323 60.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 8.0e-105 384.4 305 62.6
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.8e-104 383.3 344 57.6
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.8e-104 383.3 347 57.9
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 8.9e-104 380.9 324 59.6
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 2.0e-103 379.8 321 59.8
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 2.2e-102 376.3 311 61.4
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 3.7e-102 375.6 319 59.2
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.9e-102 375.2 326 60.1
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.7e-100 369.4 325 58.8
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 2.7e-100 369.4 303 61.4
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 4.3e-98 362.1 300 61.3
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 2.0e-95 353.2 300 60.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 4.4e-95 352.1 420 47.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 5.4e-93 345.1 319 56.7
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 9.2e-93 344.4 297 57.9
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.0e-92 343.2 236 71.6
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 7.8e-92 341.3 235 72.3
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.1e-90 337.4 257 63.0
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.1e-90 337.4 246 66.3
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.2e-89 334.0 249 66.3
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 3.6e-89 332.4 301 57.5
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 6.2e-89 331.6 290 59.3
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 4.4e-87 325.5 286 60.5
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.3e-86 321.2 226 68.1
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.9e-85 320.1 226 66.8
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.7e-84 316.2 286 58.0
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 3.3e-82 309.3 301 55.5
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.8e-80 303.5 282 54.3
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 3.8e-70 269.2 258 56.6
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.3e-59 234.2 275 48.0
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 1.7e-59 233.8 270 44.8
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 4.3e-58 229.2 248 48.4
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.9e-54 215.7 318 42.1
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.1e-52 210.3 296 44.3
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.8e-48 197.2 195 51.8
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 3.0e-43 179.9 263 41.4
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 6.1e-36 155.6 121 66.1
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.3e-35 154.5 175 47.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 2.5e-34 150.2 186 48.4
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.4e-32 143.7 128 53.1
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.1e-32 143.3 142 53.5
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 3.0e-27 126.7 105 59.0
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 2.4e-24 117.1 90 61.1
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 4.1e-24 116.3 104 58.7
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 2.0e-18 97.4 93 52.7
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 3.5e-15 86.7 56 69.6
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.5e-10 71.2 52 61.5
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.6e-07 61.2 57 56.1
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 4.5e-07 59.7 33 75.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 1.7e-06 57.8 73 42.5
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 1.7e-06 57.8 73 42.5
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 1.7e-06 57.8 73 42.5
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 3.8e-06 56.6 37 75.7


User provided reference genes

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