Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.3e-302 1042.3 565 100.0
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 7.7e-178 627.9 689 57.9
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.5e-173 613.6 683 56.7
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.4e-171 607.1 683 57.4
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.8e-166 590.1 676 55.8
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 5.2e-158 562.0 622 57.9
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 9.5e-152 541.2 629 55.8
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 2.8e-151 539.7 628 56.5
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 3.6e-151 539.3 629 55.6
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 2.3e-150 536.6 634 56.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 9.9e-149 531.2 630 54.9
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 3.3e-144 516.2 659 53.3
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 1.1e-142 511.1 682 51.6
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-129 467.6 620 52.4
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 9.0e-110 401.7 626 46.8
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 5.9e-93 345.9 567 45.7
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.7e-87 327.8 597 42.2
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.2e-84 317.4 506 45.7
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.2e-84 317.4 646 39.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.5e-83 313.9 694 38.3
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.1e-82 310.8 705 38.0
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 6.7e-81 305.8 665 38.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.1e-80 305.1 475 48.0
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.3e-79 301.6 719 36.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.2e-79 300.8 505 44.0
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 8.2e-79 298.9 544 42.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.4e-78 298.1 673 37.3
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.8e-78 297.7 685 37.8
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.2e-77 295.0 510 45.1
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.4e-75 285.4 684 37.0
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.2e-74 285.0 684 37.0
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.6e-74 284.6 722 37.0
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.0e-73 282.0 695 36.1
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-73 281.6 693 36.5
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 5.2e-73 279.6 696 34.1
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.5e-72 278.1 674 37.5
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.0e-72 277.7 420 46.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.3e-71 275.0 721 34.8
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.1e-70 271.9 640 37.8
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.4e-70 270.8 747 33.3
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 4.1e-70 270.0 679 35.2
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.6e-69 268.1 715 36.1
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.7e-69 265.8 700 35.0
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.7e-69 265.8 727 34.9
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 7.7e-69 265.8 678 35.5
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.9e-68 263.8 700 35.6
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 6.5e-68 262.7 658 36.8
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 8.5e-68 262.3 486 43.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.5e-67 261.5 636 38.2
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.9e-67 261.2 716 35.8
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.5e-67 260.8 518 41.3
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.1e-66 257.7 711 34.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.6e-66 256.9 731 33.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 6.1e-66 256.1 685 34.5
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.8e-65 254.6 654 33.9
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.0e-65 253.8 654 33.9
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 3.0e-65 253.8 506 40.3
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.8e-65 252.7 664 35.1
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 8.8e-65 252.3 503 40.2
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.5e-64 251.5 658 34.8
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.6e-64 250.8 672 33.2
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.4e-64 250.4 522 39.5
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.7e-63 248.1 743 32.2
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.8e-63 247.3 660 34.8
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.1e-62 245.4 661 34.5
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.1e-62 243.8 640 35.9
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 5.4e-62 243.0 666 34.4
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 7.0e-62 242.7 682 34.2
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 9.1e-62 242.3 627 35.4
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 2.7e-61 240.7 670 33.4
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.5e-61 240.4 741 33.7
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.7e-60 238.0 603 36.8
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 6.5e-60 236.1 736 34.0
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.1e-59 235.3 523 38.8
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.9e-59 234.6 508 39.0
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 7.2e-59 232.6 563 37.5
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.2e-58 231.9 567 37.7
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.8e-57 228.0 493 37.3
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.3e-57 227.6 660 32.6
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 5.7e-56 223.0 609 35.6
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 9.8e-56 222.2 655 32.5
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.4e-54 217.6 479 37.6
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 4.1e-54 216.9 609 34.6
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 5.4e-54 216.5 490 38.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.2e-53 215.3 499 36.3
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.0e-52 212.2 488 35.9
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.7e-52 211.5 764 30.6
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.8e-50 204.1 683 32.4
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 8.0e-50 202.6 767 29.5
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.3e-49 201.1 195 63.6
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 5.2e-49 199.9 628 31.8
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.4e-48 197.2 720 30.0
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 9.8e-48 195.7 422 40.0
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.8e-48 195.7 240 50.4
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.2e-47 194.5 786 29.1
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 6.4e-47 193.0 561 32.8
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 6.4e-47 193.0 410 35.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 6.4e-47 193.0 632 31.5
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 6.4e-47 193.0 595 34.3
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 3.2e-46 190.7 649 31.6
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.0e-44 185.7 592 32.9
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.0e-44 185.7 621 31.6
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.7e-44 184.9 714 29.7
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 8.6e-44 182.6 197 53.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.1e-43 182.2 359 38.7
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 4.3e-43 180.3 714 29.1
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 2.8e-42 177.6 788 29.3
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 3.4e-40 170.6 396 38.9
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 4.1e-38 163.7 804 28.4
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 7.8e-37 159.5 609 31.0
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.0e-36 159.1 619 30.5
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 5.0e-36 156.8 493 32.3
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 5.6e-35 153.3 551 31.0
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.2e-34 152.1 387 38.0
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 3.4e-32 144.1 683 29.3
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 7.5e-32 142.9 436 31.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 4.9e-31 140.2 558 29.0
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 2.4e-30 137.9 615 31.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 2.4e-25 121.3 76 76.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 2.4e-17 94.7 470 27.7
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 6.9e-17 93.2 70 62.9
A08p12810 Brassica napus HOM05D004882 ORTHO05D005551 9.3e-14 82.8 143 45.5
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.6e-13 80.5 118 49.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.9e-12 77.4 111 45.0
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 4.3e-11 73.9 80 50.0
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.6e-11 72.8 175 37.1
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.0e-09 67.4 40 72.5
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.0e-08 65.1 59 57.6
A02p22620 Brassica napus HOM05D016870 ORTHO05D005551 3.4e-08 64.3 78 55.1
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.8e-07 60.8 88 45.5
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 6.4e-07 60.1 81 45.7
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.4e-07 59.7 291 26.5
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 8.4e-07 59.7 269 28.6
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.4e-06 58.9 63 49.2
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.9e-06 58.5 87 39.1


User provided reference genes

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