Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 3.1e-263 911.4 501 100.0
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 8.8e-117 424.9 470 55.5
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 3.3e-103 379.8 486 51.2
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 3.5e-97 359.8 489 49.1
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 4.5e-97 359.4 465 49.9
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 2.9e-96 356.7 471 46.5
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 8.9e-93 345.1 465 48.6
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 8.9e-93 345.1 506 47.6
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.2e-92 344.7 416 52.6
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 7.5e-92 342.0 500 46.6
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 6.0e-89 332.4 516 47.3
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.1e-87 328.2 495 46.9
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 4.0e-85 319.7 479 49.3
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 1.1e-34 152.1 492 30.5
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.5e-33 147.1 215 46.0
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 7.9e-33 146.0 510 29.0
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 1.3e-32 145.2 540 28.0
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 3.9e-32 143.7 490 28.2
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 1.5e-31 141.7 540 28.5
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.3e-27 128.6 508 28.1
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 2.9e-27 127.5 534 28.1
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 5.0e-27 126.7 525 26.7
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 1.4e-26 125.2 537 27.7
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 1.3e-22 112.1 489 29.0
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 1.3e-22 112.1 504 28.2
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 3.7e-22 110.5 528 26.1
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 8.2e-22 109.4 525 26.3
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 1.1e-21 109.0 453 27.2
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 1.2e-20 105.5 527 26.2
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 1.5e-20 105.1 448 26.8
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.0e-20 104.8 533 25.7
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 4.5e-20 103.6 407 28.3
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 5.9e-20 103.2 418 28.0
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.1e-18 99.0 400 28.0
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 1.4e-18 98.6 408 27.5
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 1.4e-18 98.6 460 28.0
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.2e-18 97.1 536 25.2
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 4.2e-18 97.1 286 31.8
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 4.2e-18 97.1 500 24.0
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 5.5e-18 96.7 439 26.2
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 1.6e-17 95.1 528 26.1
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 2.7e-17 94.4 528 25.8
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 3.6e-17 94.0 393 26.0
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 3.0e-16 90.9 515 24.7
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.9e-16 90.5 527 24.5
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 3.9e-16 90.5 403 27.3
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 5.7e-15 86.7 390 25.6
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 9.7e-15 85.9 418 27.8
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 9.7e-15 85.9 339 28.6
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.3e-14 85.5 417 25.4
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.3e-14 85.5 417 25.4
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 2.2e-14 84.7 436 25.5
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 2.2e-14 84.7 403 28.3
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 4.8e-14 83.6 468 25.2
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.1e-13 82.4 400 25.2
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 3.1e-13 80.9 406 24.1
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 4.1e-13 80.5 408 25.2
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 4.1e-13 80.5 427 23.9
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 5.3e-13 80.1 487 28.5
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 1.5e-12 78.6 427 26.0
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.0e-12 78.2 412 26.2
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 2.0e-12 78.2 398 23.9
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 2.6e-12 77.8 309 24.6
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 1.0e-11 75.9 393 24.7
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 2.9e-11 74.3 405 23.7
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 1.1e-10 72.4 328 25.6
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 1.1e-10 72.4 313 25.9
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.5e-10 72.0 415 25.5
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 1.9e-10 71.6 401 30.4
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 1.9e-10 71.6 401 25.7
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 2.5e-10 71.2 411 24.8
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 3.2e-10 70.9 501 25.0
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 3.2e-10 70.9 485 25.2
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 3.2e-10 70.9 364 26.4
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 7.2e-10 69.7 144 34.7
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 9.4e-10 69.3 420 25.0
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 1.6e-09 68.6 302 26.2
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 1.6e-09 68.6 495 22.8
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 2.7e-09 67.8 442 25.6
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 4.7e-09 67.0 145 35.2
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 2.3e-08 64.7 499 23.2
AL3G44940 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 8.8e-08 62.8 169 33.7
AL6G36200 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 8.8e-08 62.8 58 60.3
AL8G18000 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 8.8e-08 62.8 169 33.7
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 1.1e-07 62.4 135 34.8
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 1.1e-07 62.4 378 24.1
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 1.5e-07 62.0 499 23.0
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 2.0e-07 61.6 125 28.0
AL6G38430 Arabidopsis lyrata HOM05D037762 ORTHO05D014024 2.6e-07 61.2 169 33.1
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 4.4e-07 60.5 96 42.7
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 7.4e-07 59.7 99 44.4
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 9.7e-07 59.3 157 33.1
AL7G17430 Arabidopsis lyrata HOM05D011963 ORTHO05D014024 1.3e-06 58.9 104 37.5
AL1G61230 Arabidopsis lyrata HOM05D011963 ORTHO05D014024 2.8e-06 57.8 104 36.5
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.8e-06 57.8 139 33.1
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.8e-06 57.0 307 24.4
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 6.3e-06 56.6 147 33.3
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 6.3e-06 56.6 425 22.6
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 6.3e-06 56.6 507 22.5


User provided reference genes

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