Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 7.1e-37 156.8 79 100.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-23 111.3 73 75.3
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 4.4e-23 110.9 73 72.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 5.8e-23 110.5 74 77.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.2e-22 108.6 73 72.6
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 8.4e-22 106.7 73 74.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 8.4e-22 106.7 79 67.1
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 8.4e-22 106.7 73 74.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 4.2e-21 104.4 79 64.6
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.4e-21 104.0 73 72.6
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 9.3e-21 103.2 79 67.1
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.2e-20 102.8 73 71.2
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-20 102.1 70 70.0
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 3.5e-20 101.3 70 70.0
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 3.5e-20 101.3 70 70.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 3.5e-20 101.3 70 70.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 3.5e-20 101.3 70 70.0
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 3.5e-20 101.3 70 70.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 7.8e-20 100.1 70 70.0
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 7.8e-20 100.1 70 70.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-19 99.8 70 68.6
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.0e-19 99.8 79 67.1
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-19 99.4 70 68.6
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.7e-19 99.0 79 65.8
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.6e-19 97.1 79 62.0
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 6.6e-19 97.1 79 64.6
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 64.6
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 64.6
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 64.6
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 64.6
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 8.7e-19 96.7 79 64.6
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 8.7e-19 96.7 70 67.1
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.1e-18 96.3 79 63.3
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.1e-18 96.3 79 63.3
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.5e-18 95.1 57 73.7
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 4.3e-18 94.4 80 65.0
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 4.3e-18 94.4 79 63.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.6e-18 94.0 81 63.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 7.3e-18 93.6 79 59.5
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 7.3e-18 93.6 80 63.8
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 9.6e-18 93.2 79 60.8
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.3e-17 92.8 80 63.8
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.3e-17 92.8 80 63.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.6e-17 92.4 79 59.5
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.1e-17 92.0 80 62.5
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.1e-17 92.0 50 80.0
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.1e-17 92.0 79 60.8
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 2.8e-17 91.7 79 60.8
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 2.8e-17 91.7 78 61.5
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.8e-17 91.7 80 61.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.6e-17 91.3 80 58.8
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 3.6e-17 91.3 48 77.1
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 4.8e-17 90.9 79 60.8
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 61.2
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.2e-17 90.5 80 60.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 6.2e-17 90.5 81 61.7
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.2e-17 90.5 81 61.7
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.2e-17 90.5 81 61.7
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 6.2e-17 90.5 79 62.0
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.2e-17 90.5 79 54.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 8.1e-17 90.1 81 60.5
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.1e-17 90.1 74 60.8
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 8.1e-17 90.1 79 60.8
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 8.1e-17 90.1 82 61.0
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 8.1e-17 90.1 74 56.8
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.4e-16 89.4 50 76.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-16 89.4 81 61.7
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.4e-16 89.4 79 54.4
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.4e-16 88.6 72 58.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.4e-16 88.6 81 59.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.1e-16 88.2 79 59.5
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.1e-16 88.2 79 58.2
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 4.0e-16 87.8 79 58.2
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.0e-16 87.8 80 58.8
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 4.0e-16 87.8 81 61.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.3e-16 87.4 81 59.3
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 6.9e-16 87.0 47 80.9
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 6.9e-16 87.0 71 56.3
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 6.9e-16 87.0 79 58.2
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 6.9e-16 87.0 79 58.2
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 6.9e-16 87.0 72 61.1
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 6.9e-16 87.0 79 58.2
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 9.0e-16 86.7 70 60.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 9.0e-16 86.7 80 58.8
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 9.0e-16 86.7 72 59.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 9.0e-16 86.7 79 59.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.0e-16 86.7 80 56.2
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.2e-15 86.3 72 59.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.0e-15 85.5 81 60.5
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.6e-15 85.1 67 62.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.4e-15 84.7 73 54.8
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 3.4e-15 84.7 79 54.4
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 4.5e-15 84.3 73 54.8
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.5e-15 84.3 71 53.5
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 5.8e-15 84.0 68 60.3
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 5.8e-15 84.0 79 57.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 5.8e-15 84.0 79 57.0
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.8e-15 84.0 78 57.7
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.8e-15 84.0 80 53.8
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 5.8e-15 84.0 69 62.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 7.6e-15 83.6 79 54.4
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 61 59.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.7e-14 82.4 77 53.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.2e-14 82.0 77 51.9
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.2e-14 82.0 77 51.9
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 3.8e-14 81.3 73 57.5
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 3.8e-14 81.3 85 56.5
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 4.9e-14 80.9 74 58.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 4.9e-14 80.9 78 50.0
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.4e-14 80.5 66 57.6
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 6.4e-14 80.5 80 51.2
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 8.4e-14 80.1 83 57.8
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 8.4e-14 80.1 80 53.8
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 8.4e-14 80.1 71 53.5
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.1e-13 79.7 77 51.9
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.4e-13 78.6 65 61.5
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.2e-13 77.8 74 55.4
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.2e-13 77.8 74 55.4
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 4.2e-13 77.8 72 55.6
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.4e-13 77.4 78 52.6
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 5.4e-13 77.4 74 54.1
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 5.4e-13 77.4 74 54.1
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.3e-13 76.6 74 51.4
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.2e-12 76.3 65 60.0
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.6e-12 75.9 83 56.6
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-12 75.9 76 53.9
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-12 75.9 76 53.9
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.1e-12 75.5 79 50.6
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.7e-12 75.1 47 68.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 3.5e-12 74.7 70 54.3
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.6e-12 74.3 79 49.4
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 4.6e-12 74.3 82 52.4
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 7.9e-12 73.6 71 49.3
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.3e-11 72.8 62 56.5
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-11 72.4 71 54.9
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.8e-11 72.4 67 53.7
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.3e-11 72.0 56 53.6
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.0e-11 71.6 77 51.9
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.9e-11 71.2 44 70.5
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 5.1e-11 70.9 53 64.2
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 8.7e-11 70.1 67 47.8
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.7e-11 70.1 67 56.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-10 69.7 62 56.5
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 4.3e-10 67.8 44 63.6
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 5.6e-10 67.4 51 60.8
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.1e-09 65.5 62 58.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 6.2e-09 63.9 62 53.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.4e-07 58.2 62 53.2
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.8e-07 57.4 35 68.6
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 7.6e-07 57.0 61 47.5
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 4.9e-06 54.3 51 52.9
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.9e-06 54.3 42 59.5


User provided reference genes

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