Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 8.9e-108 393.7 204 100.0
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 2.5e-41 172.9 183 55.7
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 2.5e-41 172.9 262 48.5
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 1.8e-39 166.8 259 48.3
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 6.9e-36 154.8 174 55.2
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 3.4e-35 152.5 192 53.1
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 2.5e-33 146.4 137 61.3
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 1.6e-32 143.7 155 56.8
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 2.5e-25 119.8 145 53.1
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 3.6e-24 115.9 148 50.0
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.1e-24 115.2 169 46.2
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.1e-24 115.2 169 46.2
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 7.9e-24 114.8 144 51.4
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 7.9e-24 114.8 146 47.9
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.0e-23 114.4 134 51.5
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 1.4e-23 114.0 153 49.0
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.8e-23 113.6 129 53.5
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 2.3e-23 113.2 175 45.7
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 3.0e-23 112.8 133 51.1
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 3.0e-23 112.8 169 43.8
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.0e-23 112.8 169 43.8
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 5.2e-23 112.1 169 43.8
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 5.2e-23 112.1 169 43.8
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 6.7e-23 111.7 169 43.2
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 1.5e-22 110.5 134 52.2
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 2.0e-22 110.2 188 40.4
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 2.6e-22 109.8 142 47.2
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 3.3e-22 109.4 138 47.8
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 3.3e-22 109.4 174 40.8
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 5.7e-22 108.6 138 50.7
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 2.2e-21 106.7 149 47.0
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 3.7e-21 105.9 142 43.7
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 3.7e-21 105.9 161 42.9
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 8.2e-21 104.8 233 39.5
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 2.4e-20 103.2 157 42.7
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 7.0e-20 101.7 152 44.7
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 9.1e-20 101.3 142 44.4
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 9.1e-20 101.3 134 49.3
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 2.0e-19 100.1 227 33.9
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 2.6e-19 99.8 140 44.3
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 3.5e-19 99.4 222 35.6
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 4.5e-19 99.0 235 36.2
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 4.5e-19 99.0 151 45.0
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 7.7e-19 98.2 157 41.4
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 1.3e-18 97.4 148 43.2
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 1.7e-18 97.1 140 45.7
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 2.2e-18 96.7 140 45.0
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 2.9e-18 96.3 130 47.7
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 6.5e-18 95.1 127 48.8
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 1.1e-17 94.4 158 42.4
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 1.1e-17 94.4 145 40.7
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.1e-17 94.4 213 37.1
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 1.1e-17 94.4 217 36.4
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 1.9e-17 93.6 138 47.1
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 1.9e-17 93.6 127 47.2
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 1.9e-17 93.6 135 48.1
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 2.5e-17 93.2 116 49.1
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.2e-17 92.8 161 42.2
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.2e-17 92.8 214 36.4
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 3.2e-17 92.8 110 50.9
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 4.2e-17 92.4 114 47.4
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 4.2e-17 92.4 134 41.8
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 4.2e-17 92.4 134 48.5
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 7.2e-17 91.7 209 39.7
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 9.4e-17 91.3 132 47.7
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 1.2e-16 90.9 161 42.9
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 2.1e-16 90.1 152 42.1
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 3.6e-16 89.4 120 50.0
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 3.6e-16 89.4 136 44.1
THA.LOC104823738 Tarenaya hassleriana HOM05D006966 ORTHO05D008111 3.6e-16 89.4 152 40.1
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 4.7e-16 89.0 134 44.0
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.7e-16 89.0 88 54.5
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 4.7e-16 89.0 122 49.2
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 1.8e-15 87.0 125 44.8
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 1.8e-15 87.0 129 43.4
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.8e-15 87.0 123 44.7
COL.COLO4_13529 Corchorus olitorius HOM05D006966 ORTHO05D008111 4.0e-15 85.9 161 40.4
CDE11G0954 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 5.2e-15 85.5 172 36.6
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 5.7e-14 82.0 124 45.2
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 5.7e-14 82.0 102 51.0
Haze_04244 Corylus avellana HOM05D006966 ORTHO05D008111 1.7e-13 80.5 115 40.0
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 2.2e-13 80.1 138 39.9
Sopen00g012390 Solanum pennellii HOM05D006966 ORTHO05D008111 2.2e-13 80.1 122 40.2
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 8.2e-13 78.2 169 37.3
Glyma.20G231100 Glycine max HOM05D006966 ORTHO05D008111 1.1e-12 77.8 134 40.3
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 1.4e-12 77.4 166 36.1
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 1.8e-12 77.0 183 32.8
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 3.1e-12 76.3 156 37.8
Manes.08G123800 Manihot esculenta HOM05D006966 ORTHO05D008111 3.1e-12 76.3 214 34.1
Glyma.10G157600 Glycine max HOM05D006966 ORTHO05D008111 5.3e-12 75.5 136 43.4
HPP92_011806 Vanilla planifolia HOM05D006966 ORTHO05D008111 5.3e-12 75.5 164 32.9
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 9.1e-12 74.7 121 40.5
DCAR_022251 Daucus carota HOM05D006966 ORTHO05D008111 2.0e-11 73.6 191 32.5
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 2.7e-11 73.2 111 43.2
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 3.5e-11 72.8 152 36.8
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 7.7e-11 71.6 113 41.6
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 7.7e-11 71.6 148 35.8
Ah.06g190190 Amaranthus hybridus HOM05D006966 ORTHO05D008111 1.0e-10 71.2 124 37.9
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 3.8e-10 69.3 167 34.1
Peaxi162Scf00071g00710 Petunia axillaris HOM05D006966 ORTHO05D008111 3.8e-10 69.3 127 40.9
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 6.5e-10 68.6 156 34.0
Ah.04g159860 Amaranthus hybridus HOM05D006966 ORTHO05D008111 8.5e-10 68.2 113 38.1
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 1.1e-09 67.8 161 31.7
TPR.G2724 Trifolium pratense HOM05D006966 ORTHO05D008111 1.5e-09 67.4 108 41.7
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.9e-09 67.0 127 35.4
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 2.5e-09 66.6 133 36.1
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 2.5e-09 66.6 159 32.1
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 3.2e-09 66.2 118 37.3
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 3.2e-09 66.2 116 37.1
TWI36G1607 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 3.2e-09 66.2 52 65.4
Dinv11270 Davidia involucrata HOM05D006966 ORTHO05D017198 4.2e-09 65.9 71 46.5
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 4.2e-09 65.9 130 36.2
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 5.5e-09 65.5 176 33.0
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 5.5e-09 65.5 128 34.4
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 5.5e-09 65.5 106 43.4
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 9.4e-09 64.7 134 35.1
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 9.4e-09 64.7 79 43.0
Psat6g148600 Pisum sativum HOM05D006966 ORTHO05D008111 9.4e-09 64.7 142 37.3
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 1.2e-08 64.3 114 37.7
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 2.1e-08 63.5 115 38.3
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 2.1e-08 63.5 166 33.7
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 2.1e-08 63.5 191 32.5
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 2.1e-08 63.5 154 33.8
AUR62000853 Chenopodium quinoa HOM05D036395 ORTHO05D008111 3.6e-08 62.8 102 40.2
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 3.6e-08 62.8 125 40.0
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 4.7e-08 62.4 131 33.6
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 4.7e-08 62.4 114 36.8
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 6.1e-08 62.0 146 33.6
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 1.0e-07 61.2 160 33.8
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 1.0e-07 61.2 196 31.6
Medtr1g082320 Medicago truncatula HOM05D006966 ORTHO05D008111 1.0e-07 61.2 67 49.3
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 1.4e-07 60.8 156 33.3
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 1.4e-07 60.8 152 34.2
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.8e-07 60.5 129 34.9
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.3e-07 60.1 134 32.8
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 2.3e-07 60.1 164 32.9
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 3.0e-07 59.7 112 37.5
HPP92_013658 Vanilla planifolia HOM05D006966 ORTHO05D008111 3.0e-07 59.7 104 37.5
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 4.0e-07 59.3 116 38.8
HPP92_013676 Vanilla planifolia HOM05D006966 ORTHO05D008111 4.0e-07 59.3 104 36.5
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 5.2e-07 58.9 129 34.1
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 5.2e-07 58.9 119 33.6
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.2e-07 58.9 132 32.6
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 6.8e-07 58.5 162 33.3
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 6.8e-07 58.5 175 32.0
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 6.8e-07 58.5 128 35.2
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 6.8e-07 58.5 116 35.3
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 8.8e-07 58.2 126 35.7
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 8.8e-07 58.2 154 33.1
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.2e-06 57.8 163 33.1
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.2e-06 57.8 155 31.0
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 1.2e-06 57.8 144 31.9
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 1.2e-06 57.8 114 36.0
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 1.5e-06 57.4 147 31.3
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 1.5e-06 57.4 111 37.8
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 2.0e-06 57.0 123 37.4
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 2.0e-06 57.0 169 32.0
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 2.0e-06 57.0 149 30.9
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 2.6e-06 56.6 132 34.8
ATR0626G041 Amborella trichopoda HOM05D001105 ORTHO05D001870 3.4e-06 56.2 124 36.3
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 3.4e-06 56.2 127 34.6
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 3.4e-06 56.2 165 31.5
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 3.4e-06 56.2 135 33.3
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 3.4e-06 56.2 145 33.8
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 3.4e-06 56.2 148 31.1
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 3.4e-06 56.2 135 32.6
A10p18420 Brassica napus HOM05D004622 ORTHO05D005431 4.4e-06 55.8 118 37.3
BraA10t43924Z Brassica rapa HOM05D004622 ORTHO05D005431 4.4e-06 55.8 118 37.3
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 4.4e-06 55.8 65 43.1
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 5.7e-06 55.5 149 32.9
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 5.7e-06 55.5 141 33.3
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 7.5e-06 55.1 130 33.8
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 7.5e-06 55.1 176 30.1
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 7.5e-06 55.1 142 32.4
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 7.5e-06 55.1 133 34.6
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 7.5e-06 55.1 127 32.3
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 7.5e-06 55.1 161 31.7
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 7.5e-06 55.1 123 35.0
Aa31LG1G13150 Aethionema arabicum HOM05D004622 ORTHO05D005431 9.8e-06 54.7 122 35.2
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 9.8e-06 54.7 129 39.5
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 9.8e-06 54.7 125 34.4


User provided reference genes

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