Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 0.0e+00 1084.7 526 100.0
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 7.5e-260 900.2 532 82.1
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 4.1e-258 894.4 532 81.8
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 6.0e-257 890.6 532 81.4
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 9.5e-255 883.2 538 79.4
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 7.5e-252 873.6 542 78.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 4.1e-250 867.8 535 79.6
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.7e-248 862.4 535 79.1
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 5.1e-248 860.9 534 78.5
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 5.1e-248 860.9 535 78.9
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 2.1e-246 855.5 560 76.4
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.2e-246 854.0 543 77.3
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.2e-246 854.0 543 77.3
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 2.0e-244 849.0 559 75.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 2.1e-238 828.9 540 74.8
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 2.4e-213 745.7 531 66.5
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.5e-212 741.5 521 67.0
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.7e-211 739.6 532 65.6
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.2e-211 739.2 521 66.8
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 4.9e-211 738.0 527 65.8
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 8.4e-211 737.3 545 63.9
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.0e-208 730.3 523 65.0
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.8e-208 729.6 536 65.1
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 3.0e-208 728.8 523 66.3
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 3.9e-208 728.4 522 65.9
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 8.7e-208 727.2 521 65.8
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 8.7e-208 727.2 521 66.2
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.5e-207 726.5 521 66.0
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 1.9e-207 726.1 517 65.6
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 4.3e-207 724.9 521 65.6
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 5.7e-207 724.5 525 65.9
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.3e-206 723.4 517 65.4
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 3.7e-206 721.8 533 63.6
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.8e-205 719.5 525 65.1
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 5.3e-205 718.0 532 63.5
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 9.0e-205 717.2 521 64.1
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.2e-204 716.8 519 65.5
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.5e-204 716.5 530 64.0
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.0e-204 716.1 523 64.8
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 5.8e-204 714.5 527 63.9
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.3e-203 713.4 521 65.1
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.7e-203 713.0 516 65.3
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.2e-203 712.6 536 63.4
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.2e-203 712.6 533 63.2
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.9e-203 712.2 519 65.3
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 5.0e-203 711.4 517 65.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-202 710.3 520 64.4
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.2e-202 708.8 521 64.3
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 7.1e-202 707.6 528 63.3
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 3.5e-201 705.3 527 63.2
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 4.6e-201 704.9 520 64.4
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 7.9e-201 704.1 517 63.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 2.3e-200 702.6 533 63.4
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 6.7e-200 701.0 526 62.2
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.5e-199 699.9 516 64.7
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.5e-199 699.1 520 63.5
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 7.4e-199 697.6 542 61.8
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 2.2e-198 696.0 590 58.1
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.7e-198 695.3 520 63.7
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 6.3e-198 694.5 522 63.0
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 8.2e-198 694.1 494 65.4
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 3.1e-197 692.2 531 61.8
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.4e-196 688.7 534 62.4
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.4e-196 688.7 517 63.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 2.2e-195 686.0 517 63.4
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 5.0e-195 684.9 531 61.4
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 6.5e-195 684.5 526 61.0
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 8.5e-195 684.1 521 61.0
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.1e-193 679.5 504 64.3
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.6e-193 678.3 537 60.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 7.9e-193 677.6 523 63.1
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 2.8e-190 669.1 475 66.1
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 6.3e-190 667.9 500 63.2
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.4e-186 656.8 525 60.8
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 5.1e-184 648.3 469 65.2
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.1e-183 647.1 511 60.3
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 8.2e-182 641.0 526 60.3
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.4e-181 640.2 571 55.9
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 2.6e-180 636.0 519 58.8
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.8e-179 632.1 527 58.6
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.2e-178 629.0 568 55.5
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 3.2e-178 629.0 519 57.8
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.7e-177 625.9 526 57.2
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.0e-175 619.8 690 47.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.3e-174 617.1 526 59.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 8.5e-171 604.4 551 55.2
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.5e-170 603.6 446 66.1
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.1e-169 599.7 441 65.1
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 1.2e-167 594.0 589 52.3
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.7e-163 580.1 531 55.4
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 3.2e-162 575.9 408 66.9
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.0e-159 566.6 508 56.9
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 4.4e-159 565.5 378 67.5
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.8e-157 560.1 526 54.0
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 4.5e-156 555.4 505 56.6
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 3.8e-155 552.4 429 61.3
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.1e-153 546.6 364 69.0
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 5.4e-149 531.9 528 50.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.3e-147 527.3 533 50.3
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.6e-143 513.1 502 53.8
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.4e-141 506.5 332 69.6
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.5e-138 497.3 306 73.2
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 1.2e-137 494.2 503 50.9
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 7.5e-135 485.0 505 49.9
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.7e-131 473.8 350 64.3
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 3.1e-128 463.0 287 72.5
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.2e-121 441.0 344 60.8
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 4.4e-119 432.6 549 42.3
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.2e-117 426.4 520 45.2
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.0e-115 421.4 254 73.2
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 6.6e-115 418.7 437 48.5
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.4e-110 401.7 356 57.0
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.8e-105 386.7 228 75.4
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.8e-105 386.7 228 75.4
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 2.6e-103 380.2 230 73.5
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 6.4e-102 375.6 232 72.0
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 7.9e-100 368.6 294 59.2
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.5e-74 284.6 512 35.9
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 6.9e-72 275.8 163 73.6
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 7.9e-68 262.3 561 32.4
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.0e-67 261.9 497 36.2
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 6.3e-65 252.7 538 32.2
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 5.3e-64 249.6 513 34.9
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.9e-61 241.1 175 64.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.8e-57 226.5 212 53.3
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-56 224.9 212 53.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-55 221.5 352 39.2
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.6e-55 221.5 223 52.9
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 2.2e-54 217.6 226 50.0
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.3e-46 191.8 266 41.4
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 3.4e-42 177.2 320 35.9
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 1.1e-32 145.6 132 54.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 3.5e-31 140.6 89 69.7
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 4.0e-27 127.1 109 56.0
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 6.8e-27 126.3 106 58.5
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.3e-25 122.1 77 71.4
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.1e-24 119.0 197 36.0
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 3.2e-24 117.5 125 45.6
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-20 105.1 85 60.0
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.8e-20 104.4 274 30.3
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.9e-13 81.6 68 61.8
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 8.1e-12 76.3 103 41.7
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 4.4e-10 70.5 41 61.0
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.7e-09 68.6 85 37.6
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 9.2e-08 62.8 105 37.1
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 1.6e-07 62.0 62 43.5
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 1.6e-07 62.0 50 56.0
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.8e-07 59.7 75 41.3
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 2.3e-06 58.2 44 52.3


User provided reference genes

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