Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G10810 Aethionema arabicum HOM05D000846 ORTHO05D058480 5.4e-47 190.7 96 100.0
Aa31LG9G17870 Aethionema arabicum HOM05D000846 ORTHO05D006755 2.1e-14 82.4 52 82.7
Carub.0007s1321 Capsella rubella HOM05D000846 ORTHO05D006755 3.5e-14 81.6 51 80.4
AL7G25080 Arabidopsis lyrata HOM05D000846 ORTHO05D006755 4.6e-14 81.3 51 82.4
AT4G27640 Arabidopsis thaliana HOM05D000846 ORTHO05D006755 1.3e-13 79.7 51 80.4
Sabra10G0129600 Salix brachista HOM05D000846 ORTHO05D006755 2.5e-12 75.5 51 76.5
Potri.010G169800 Populus trichocarpa HOM05D000846 ORTHO05D006755 5.6e-12 74.3 51 74.5
Peaxi162Scf00011g00530 Petunia axillaris HOM05D000846 ORTHO05D006755 1.2e-11 73.2 51 72.5
Peaxi162Scf00017g02641 Petunia axillaris HOM05D000846 ORTHO05D006755 1.2e-11 73.2 51 72.5
ECA240G4115 Erigeron canadensis HOM05D000846 ORTHO05D006755 1.6e-11 72.8 51 72.5
Cpa.g.sc39.48 Carica papaya HOM05D000846 ORTHO05D006755 2.1e-11 72.4 51 72.5
Duzib251G0663 Durio zibethinus HOM05D000846 ORTHO05D006755 2.1e-11 72.4 51 72.5
Solyc01g104070.3 Solanum lycopersicum HOM05D000846 ORTHO05D006755 2.1e-11 72.4 51 68.6
Sopen01g046480 Solanum pennellii HOM05D000846 ORTHO05D006755 2.1e-11 72.4 51 68.6
PGSC0003DMG400023766 Solanum tuberosum HOM05D000846 ORTHO05D006755 2.1e-11 72.4 51 68.6
Potri.008G085800 Populus trichocarpa HOM05D000846 ORTHO05D006755 8.1e-11 70.5 51 68.6
HanXRQChr03g0073611 Helianthus annuus HOM05D000846 ORTHO05D006755 1.4e-10 69.7 51 68.6
Lalb_Chr20g0123491 Lupinus albus HOM05D000846 ORTHO05D006755 1.4e-10 69.7 51 68.6
CiPaw.06G146600 Carya illinoinensis HOM05D000846 ORTHO05D006755 1.8e-10 69.3 51 70.6
Thhalv10024293m.g Eutrema salsugineum HOM05D000846 ORTHO05D006755 1.8e-10 69.3 50 74.0
Lsat_1_v5_gn_9_118641 Lactuca sativa HOM05D000846 ORTHO05D006755 1.8e-10 69.3 51 66.7
CAN.G798.7 Capsicum annuum HOM05D000846 ORTHO05D006755 2.4e-10 68.9 51 66.7
TAR381G0552 Trochodendron aralioides HOM05D000846 ORTHO05D006755 2.4e-10 68.9 51 70.6
Eucgr.I02730 Eucalyptus grandis HOM05D000846 ORTHO05D006755 3.1e-10 68.6 51 66.7
Nitab4.5_0000816g0070 Nicotiana tabacum HOM05D000846 ORTHO05D006755 3.1e-10 68.6 51 66.7
Nitab4.5_0010336g0020 Nicotiana tabacum HOM05D000846 ORTHO05D006755 3.1e-10 68.6 51 66.7
Gohir.A05G308500 Gossypium hirsutum HOM05D000846 ORTHO05D006755 4.0e-10 68.2 52 67.3
Gohir.D05G309200 Gossypium hirsutum HOM05D000846 ORTHO05D006755 4.0e-10 68.2 52 67.3
Gorai.009G329500 Gossypium raimondii HOM05D000846 ORTHO05D006755 4.0e-10 68.2 52 67.3
Dinv19375 Davidia involucrata HOM05D000846 ORTHO05D006755 5.2e-10 67.8 51 68.6
Thecc.02G295900 Theobroma cacao HOM05D000846 ORTHO05D006755 5.2e-10 67.8 52 69.2
ClCG05G009620 Citrullus lanatus HOM05D000846 ORTHO05D006755 6.8e-10 67.4 51 66.7
MELO3C019464.2 Cucumis melo HOM05D000846 ORTHO05D006755 6.8e-10 67.4 51 66.7
EL10Ac6g13093 Beta vulgaris HOM05D000846 ORTHO05D006755 8.9e-10 67.0 52 63.5
Ca_00067_v3 Cicer arietinum L. HOM05D000846 ORTHO05D006755 1.2e-09 66.6 51 66.7
AUR62026329 Chenopodium quinoa HOM05D000846 ORTHO05D006755 1.5e-09 66.2 52 63.5
AUR62026527 Chenopodium quinoa HOM05D000846 ORTHO05D006755 1.5e-09 66.2 52 63.5
PGR142G3343 Punica granatum HOM05D000846 ORTHO05D006755 1.5e-09 66.2 51 62.7
Ciclev10030583m.g Citrus clementina HOM05D000846 ORTHO05D006755 2.0e-09 65.9 52 63.5
CsaV3_3G019110 Cucumis sativus L. HOM05D000846 ORTHO05D006755 2.6e-09 65.5 51 64.7
vmacro19885 Vaccinium macrocarpon HOM05D000846 ORTHO05D006755 2.6e-09 65.5 51 66.7
GSVIVG01022879001 Vitis vinifera HOM05D000846 ORTHO05D006755 2.6e-09 65.5 51 68.6
EL10Ac9g22362 Beta vulgaris HOM05D000846 ORTHO05D006755 3.4e-09 65.1 52 63.5
Cfa005511 Carpinus fangiana HOM05D000846 ORTHO05D006755 3.4e-09 65.1 51 64.7
Haze_01712 Corylus avellana HOM05D000846 ORTHO05D006755 3.4e-09 65.1 51 64.7
DCAR_001823 Daucus carota HOM05D000846 ORTHO05D006755 3.4e-09 65.1 51 64.7
MBI01_g09375_MAGBIO Magnolia biondii HOM05D000846 ORTHO05D006755 3.4e-09 65.1 50 66.0
Oeu008902.1 Olea europaea HOM05D000846 ORTHO05D006755 3.4e-09 65.1 52 61.5
Oeu008904.1 Olea europaea HOM05D000846 ORTHO05D006755 3.4e-09 65.1 52 61.5
Sed0025663 Sechium edule HOM05D000846 ORTHO05D006755 3.4e-09 65.1 51 64.7
Nitab4.5_0000176g0040 Nicotiana tabacum HOM05D000846 ORTHO05D006755 4.4e-09 64.7 51 60.8
SEGI_41093 Sequoiadendron giganteum HOM05D000846 ORTHO05D006755 4.4e-09 64.7 52 67.3
Ah.03g132090 Amaranthus hybridus HOM05D000846 ORTHO05D006755 5.8e-09 64.3 51 64.7
Migut.B00826 Erythranthe guttata HOM05D000846 ORTHO05D006755 5.8e-09 64.3 51 62.7
THA.LOC104805711 Tarenaya hassleriana HOM05D000846 ORTHO05D006755 5.8e-09 64.3 50 70.0
ATR0665G276 Amborella trichopoda HOM05D000846 ORTHO05D006755 7.6e-09 63.9 51 64.7
Nn1g08833 Nelumbo nucifera HOM05D000846 ORTHO05D006755 7.6e-09 63.9 51 64.7
Actinidia39034 Actinidia chinensis HOM05D000846 ORTHO05D006755 9.9e-09 63.5 51 64.7
CSS0000492 Camellia sinensis var. sinensis HOM05D000846 ORTHO05D006755 9.9e-09 63.5 51 64.7
Nn5g28327 Nelumbo nucifera HOM05D000846 ORTHO05D006755 9.9e-09 63.5 51 64.7
Prupe.1G571100 Prunus persica HOM05D000846 ORTHO05D006755 9.9e-09 63.5 51 64.7
Medtr2g006750 Medicago truncatula HOM05D000846 ORTHO05D006755 1.3e-08 63.2 51 62.7
Rhsim05G0119700 Rhododendron simsii HOM05D000846 ORTHO05D006755 1.3e-08 63.2 51 64.7
Sp7g25600 Schrenkiella parvula HOM05D000846 ORTHO05D006755 1.3e-08 63.2 51 68.6
Actinidia30531 Actinidia chinensis HOM05D006894 ORTHO05D008724 2.2e-08 62.4 51 62.7
BcaNung01650 Brassica carinata HOM05D000846 ORTHO05D006755 2.2e-08 62.4 35 85.7
Glyma.15G046000 Glycine max HOM05D000846 ORTHO05D006755 2.2e-08 62.4 51 62.7
MSTRG.16514 Avicennia marina HOM05D000846 ORTHO05D006755 2.9e-08 62.0 51 60.8
BcaC06g32677 Brassica carinata HOM05D000846 ORTHO05D006755 3.8e-08 61.6 31 90.3
A03p57390 Brassica napus HOM05D000846 ORTHO05D006755 3.8e-08 61.6 31 90.3
C07p55610 Brassica napus HOM05D000846 ORTHO05D006755 3.8e-08 61.6 31 90.3
BolC7t46041H Brassica oleracea HOM05D000846 ORTHO05D006755 3.8e-08 61.6 31 90.3
BraA03t14805Z Brassica rapa HOM05D000846 ORTHO05D006755 3.8e-08 61.6 31 90.3
TPR.G2061 Trifolium pratense HOM05D000846 ORTHO05D006755 3.8e-08 61.6 51 60.8
SGA_v2.0_scaffold110G31332 Striga asiatica HOM05D000846 ORTHO05D006755 8.4e-08 60.5 51 58.8
Glyma.08G187000 Glycine max HOM05D000846 ORTHO05D006755 1.1e-07 60.1 51 60.8
BcaC09g50565 Brassica carinata HOM05D000846 ORTHO05D006755 1.4e-07 59.7 35 80.0
BolC1t02333H Brassica oleracea HOM05D000846 ORTHO05D006755 1.4e-07 59.7 35 80.0
Phvul.006G215200 Phaseolus vulgaris HOM05D000846 ORTHO05D006755 1.9e-07 59.3 51 58.8
Sc07g0004850 Simmondsia chinensis HOM05D000846 ORTHO05D006755 2.4e-07 58.9 52 59.6
PSO170G2918 Papaver somniferum HOM05D000846 ORTHO05D006755 3.2e-07 58.5 50 58.0
PSO528G0036 Papaver somniferum HOM05D000846 ORTHO05D006755 3.2e-07 58.5 50 58.0
A01p18930 Brassica napus HOM05D000846 ORTHO05D006755 4.2e-07 58.2 35 80.0
C01p23880 Brassica napus HOM05D000846 ORTHO05D006755 4.2e-07 58.2 35 77.1
BraA01t01834Z Brassica rapa HOM05D000846 ORTHO05D006755 4.2e-07 58.2 35 80.0
Psat1g221240 Pisum sativum HOM05D000846 ORTHO05D006755 4.2e-07 58.2 51 54.9
MD15G1425400 Malus domestica HOM05D000846 ORTHO05D006755 5.4e-07 57.8 51 60.8
HPP92_009356 Vanilla planifolia HOM05D000846 ORTHO05D006755 5.4e-07 57.8 51 62.7
VMungo0540G0381 Vigna mungo HOM05D000846 ORTHO05D006755 5.4e-07 57.8 51 56.9
Lj6g0026631 Lotus japonicus HOM05D000846 ORTHO05D006755 9.3e-07 57.0 52 57.7
FAN04G0084 Fragaria x ananassa HOM05D000846 ORTHO05D006755 2.7e-06 55.5 51 58.8
FAN08G3691 Fragaria x ananassa HOM05D000846 ORTHO05D006755 2.7e-06 55.5 51 58.8
FAN13G1889 Fragaria x ananassa HOM05D000846 ORTHO05D006755 2.7e-06 55.5 51 58.8
MD08G1234100 Malus domestica HOM05D000846 ORTHO05D006755 2.7e-06 55.5 51 58.8
FvH4_5g29150 Fragaria vesca HOM05D000846 ORTHO05D006755 3.5e-06 55.1 51 58.8
FAN18G2713 Fragaria x ananassa HOM05D000846 ORTHO05D006755 3.5e-06 55.1 51 58.8
RcHm_v2.0_Chr7g0221821 Rosa chinensis HOM05D000846 ORTHO05D006755 3.5e-06 55.1 51 58.8
Cc02_g22620 Coffea canephora HOM05D000846 ORTHO05D006755 7.8e-06 53.9 50 56.0
Manes.03G080600 Manihot esculenta HOM05D000846 ORTHO05D006755 7.8e-06 53.9 51 54.9


User provided reference genes

Program Settings