Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G9610 Aethionema arabicum HOM05D007164 ORTHO05D008802 7.1e-240 833.6 434 100.0
Thhalv10007546m.g Eutrema salsugineum HOM05D007164 ORTHO05D008802 1.0e-121 441.0 466 56.4
Carub.0001s0209 Capsella rubella HOM05D007164 ORTHO05D008802 4.3e-120 435.6 477 56.8
AL1G12400 Arabidopsis lyrata HOM05D007164 ORTHO05D008802 6.5e-116 421.8 473 54.3
Sp1g01950 Schrenkiella parvula HOM05D007164 ORTHO05D008802 3.3e-112 409.5 468 54.7
THA.LOC104825977 Tarenaya hassleriana HOM05D007164 ORTHO05D008802 3.4e-109 399.4 464 51.3
C08p00350 Brassica napus HOM05D007164 ORTHO05D008802 7.7e-109 398.3 483 51.3
A08p37510 Brassica napus HOM05D007164 ORTHO05D008802 3.8e-108 396.0 455 54.5
BolC8t46836H Brassica oleracea HOM05D007164 ORTHO05D008802 9.4e-107 391.3 485 50.7
BraA08t35648Z Brassica rapa HOM05D007164 ORTHO05D008802 3.0e-105 386.3 467 51.4
BcaC07g36981 Brassica carinata HOM05D007164 ORTHO05D008802 7.7e-101 371.7 390 54.9
BcaB03g13496 Brassica carinata HOM05D007164 ORTHO05D008802 3.2e-99 366.3 449 52.1
AT1G02960 Arabidopsis thaliana HOM05D007164 ORTHO05D008802 9.4e-83 311.6 376 52.7
CARHR002290 Cardamine hirsuta HOM05D007164 ORTHO05D008802 9.2e-62 241.9 202 64.4
Cpa.g.sc9.198 Carica papaya HOM05D007164 ORTHO05D008802 1.4e-38 164.9 390 32.6
COL.COLO4_23399 Corchorus olitorius HOM05D007164 ORTHO05D008802 1.7e-31 141.4 480 29.0
TPR.G27420 Trifolium pratense HOM05D007164 ORTHO05D008802 2.9e-31 140.6 417 31.7
Manes.01G216000 Manihot esculenta HOM05D007164 ORTHO05D008802 8.4e-31 139.0 515 28.7
TWI23G0507 Tripterygium wilfordii HOM05D007164 ORTHO05D008802 4.6e-29 133.3 488 26.0
Rhsim01G0283000 Rhododendron simsii HOM05D007164 ORTHO05D008802 1.9e-27 127.9 387 30.5
ClCG05G010410 Citrullus lanatus HOM05D007164 ORTHO05D008802 1.8e-25 121.3 359 29.2
Lj6g0003922 Lotus japonicus HOM05D007164 ORTHO05D008802 4.0e-25 120.2 473 29.0
Potri.002G208058 Populus trichocarpa HOM05D007164 ORTHO05D008802 4.0e-25 120.2 478 27.2
Prupe.8G256400 Prunus persica HOM05D007164 ORTHO05D008802 5.3e-25 119.8 378 29.9
Duzib138G1086 Durio zibethinus HOM05D007164 ORTHO05D008802 6.9e-25 119.4 506 25.3
Atru.chr5.1222 Acer truncatum HOM05D007164 ORTHO05D008802 9.0e-25 119.0 184 40.8
Gorai.004G088600 Gossypium raimondii HOM05D007164 ORTHO05D008802 1.2e-24 118.6 365 27.1
Medtr3g082270 Medicago truncatula HOM05D007164 ORTHO05D008802 1.5e-24 118.2 209 37.8
Gohir.D08G084100 Gossypium hirsutum HOM05D007164 ORTHO05D008802 2.0e-24 117.9 410 28.0
TAR636G2054 Trochodendron aralioides HOM05D007164 ORTHO05D008802 2.6e-24 117.5 199 37.2
Psat5g105520 Pisum sativum HOM05D007164 ORTHO05D008802 3.4e-24 117.1 413 28.1
CiPaw.07G104500 Carya illinoinensis HOM05D007164 ORTHO05D008802 4.4e-24 116.7 229 34.5
Aqoxy2G03039 Aquilegia oxysepala HOM05D007164 ORTHO05D008802 5.8e-24 116.3 376 29.3
AUR62033184 Chenopodium quinoa HOM05D007164 ORTHO05D008802 5.8e-24 116.3 203 36.9
Ah.15g093880 Amaranthus hybridus HOM05D007164 ORTHO05D008802 7.6e-24 115.9 206 35.9
vmacro14990 Vaccinium macrocarpon HOM05D007164 ORTHO05D008802 9.9e-24 115.5 318 30.5
arahy.Tifrunner.gnm1.ann1.JK4YNR Arachis hypogaea HOM05D007164 ORTHO05D008802 2.2e-23 114.4 197 37.1
arahy.Tifrunner.gnm1.ann1.94G738 Arachis hypogaea HOM05D007164 ORTHO05D008802 8.4e-23 112.5 197 37.6
Gohir.A08G075000 Gossypium hirsutum HOM05D007164 ORTHO05D008802 8.4e-23 112.5 364 26.6
Lalb_Chr18g0047211 Lupinus albus HOM05D007164 ORTHO05D008802 8.4e-23 112.5 418 28.7
Phvul.007G122524 Phaseolus vulgaris HOM05D007164 ORTHO05D008802 1.4e-22 111.7 205 36.1
Eucgr.K03454 Eucalyptus grandis HOM05D007164 ORTHO05D008802 3.2e-22 110.5 186 39.2
MD03G1283300 Malus domestica HOM05D007164 ORTHO05D008802 5.4e-22 109.8 364 29.7
RcHm_v2.0_Chr6g0293271 Rosa chinensis HOM05D007164 ORTHO05D008802 9.3e-22 109.0 191 36.6
FAN24G2541 Fragaria x ananassa HOM05D007164 ORTHO05D008802 3.5e-21 107.1 195 33.3
FAN20G2954 Fragaria x ananassa HOM05D007164 ORTHO05D008802 6.0e-21 106.3 205 34.6
CANSAT25G0358 Cannabis sativa HOM05D007164 ORTHO05D008802 7.9e-21 105.9 470 26.4
Glyma.13G007800 Glycine max HOM05D007164 ORTHO05D008802 7.9e-21 105.9 204 35.3
HanXRQChr10g0283971 Helianthus annuus HOM05D007164 ORTHO05D008802 7.9e-21 105.9 329 28.6
Lj2A1189G41 Lonicera japonica HOM05D007164 ORTHO05D008802 7.9e-21 105.9 251 27.5
Sabra02G0151300 Salix brachista HOM05D007164 ORTHO05D008802 1.0e-20 105.5 224 33.5
QL12p030187 Quercus lobata HOM05D007164 ORTHO05D008802 1.7e-20 104.8 356 27.8
FAN27G1449 Fragaria x ananassa HOM05D007164 ORTHO05D008802 2.3e-20 104.4 191 33.5
CsaV3_3G018070 Cucumis sativus L. HOM05D007164 ORTHO05D008802 3.0e-20 104.0 325 27.4
Actinidia24839 Actinidia chinensis HOM05D007164 ORTHO05D008802 3.9e-20 103.6 180 37.2
AUR62008594 Chenopodium quinoa HOM05D007164 ORTHO05D008802 3.9e-20 103.6 178 37.6
Thecc.01G295000 Theobroma cacao HOM05D007164 ORTHO05D008802 6.6e-20 102.8 196 34.2
MSTRG.21615 Avicennia marina HOM05D007164 ORTHO05D008802 1.9e-19 101.3 213 35.7
SGA_v2.0_scaffold2G01414 Striga asiatica HOM05D007164 ORTHO05D008802 4.3e-19 100.1 218 35.8
Sopen09g029680 Solanum pennellii HOM05D007164 ORTHO05D008802 5.6e-19 99.8 196 35.2
Sed0021441 Sechium edule HOM05D007164 ORTHO05D008802 1.6e-18 98.2 360 26.1
arahy.Tifrunner.gnm1.ann1.PB1NMW Arachis hypogaea HOM05D007164 ORTHO05D008802 8.1e-18 95.9 170 36.5
PGR044G2041 Punica granatum HOM05D007164 ORTHO05D008802 1.4e-17 95.1 194 30.9
Sabra02G0151900 Salix brachista HOM05D007164 ORTHO05D008802 1.8e-17 94.7 250 29.6
HPP92_027362 Vanilla planifolia HOM05D007164 ORTHO05D008802 3.1e-17 94.0 133 39.8
unitig_0.g652 Utricularia gibba HOM05D007164 ORTHO05D008802 4.0e-17 93.6 156 35.9
ATR0053G018 Amborella trichopoda HOM05D007164 ORTHO05D008802 6.9e-17 92.8 167 37.1
Zm00001eb252420 Zea mays HOM05D007164 ORTHO05D008802 6.9e-17 92.8 192 28.6
BcaB06g26239 Brassica carinata HOM05D007164 ORTHO05D008802 2.0e-16 91.3 98 53.1
Cc11_g02370 Coffea canephora HOM05D007164 ORTHO05D008802 2.6e-16 90.9 202 33.7
ECA247G0548 Erigeron canadensis HOM05D002562 ORTHO05D002808 2.6e-16 90.9 477 24.5
PGSC0003DMG401011367 Solanum tuberosum HOM05D007164 ORTHO05D008802 2.6e-16 90.9 418 27.3
SalBow3G2762 Salvia bowleyana HOM05D007164 ORTHO05D008802 3.4e-16 90.5 411 27.7
ATR0691G271 Amborella trichopoda HOM05D007164 ORTHO05D008802 4.5e-16 90.1 132 38.6
Lsat_1_v5_gn_9_3101 Lactuca sativa HOM05D007164 ORTHO05D008802 1.9e-14 84.7 182 31.3
SEGI_29739 Sequoiadendron giganteum HOM05D007164 ORTHO05D008802 3.2e-14 84.0 113 37.2
Sc17g0003330 Simmondsia chinensis HOM05D007164 ORTHO05D008802 4.2e-14 83.6 171 32.2
Migut.D00187 Erythranthe guttata HOM05D007164 ORTHO05D008802 9.3e-14 82.4 175 37.7
HanXRQChr10g0283981 Helianthus annuus HOM05D007164 ORTHO05D008802 8.7e-12 75.9 96 40.6
Oeu047459.1 Olea europaea HOM05D007164 ORTHO05D008802 8.7e-12 75.9 433 24.0
Dinv33025 Davidia involucrata HOM05D007164 ORTHO05D008802 7.4e-11 72.8 444 24.5
PGR044G2559 Punica granatum HOM05D007164 ORTHO05D008802 1.6e-10 71.6 207 28.5
Haze_04871 Corylus avellana HOM05D007164 ORTHO05D008802 2.1e-10 71.2 137 33.6
MBI16_g23765_MAGBIO Magnolia biondii HOM05D007164 ORTHO05D008802 2.1e-10 71.2 154 35.1
Hund18121 Selenicereus undatus HOM05D007164 ORTHO05D008802 1.4e-09 68.6 165 30.3
Carub.0033s0003 Capsella rubella HOM05D003036 ORTHO05D008712 4.0e-09 67.0 72 61.1
AagrBONN_evm.TU.Sc2ySwM_117.3923 Anthoceros agrestis HOM05D007164 ORTHO05D008802 5.3e-09 66.6 207 27.1
Pp3c3_15490 Physcomitrium patens HOM05D007164 ORTHO05D008802 2.0e-08 64.7 165 27.3
FvH4_2g25160 Fragaria vesca HOM05D007164 ORTHO05D008802 3.4e-08 63.9 130 33.1
Ciclev10017702m.g Citrus clementina HOM05D007164 ORTHO05D008802 1.0e-07 62.4 255 26.7
AT1G02965 Arabidopsis thaliana HOM05D007164 ORTHO05D008802 1.3e-07 62.0 100 45.0
BcaB06g26240 Brassica carinata HOM05D007164 ORTHO05D008802 1.7e-07 61.6 70 52.9
Nitab4.5_0009457g0020 Nicotiana tabacum HOM05D007164 ORTHO05D008802 2.9e-07 60.8 118 35.6
Nitab4.5_0005474g0060 Nicotiana tabacum HOM05D000498 ORTHO05D000354 5.5e-06 56.6 118 33.9


User provided reference genes

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