Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.4e-81 306.2 155 100.0
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 9.0e-44 180.6 152 67.8
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.1e-30 137.1 103 73.8
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 9.0e-28 127.5 100 73.0
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 3.4e-27 125.6 103 68.9
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 7.6e-27 124.4 103 68.9
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.0e-26 124.0 103 66.0
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 1.0e-26 124.0 103 65.0
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 4.9e-26 121.7 103 64.1
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 4.9e-26 121.7 103 68.9
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 6.5e-26 121.3 103 68.9
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 1.4e-25 120.2 103 68.0
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 9.3e-25 117.5 100 69.0
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 4.6e-24 115.2 103 63.1
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 4.8e-21 105.1 157 48.4
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 2.5e-17 92.8 103 52.4
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 7.1e-17 91.3 103 51.5
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 7.1e-17 91.3 104 53.8
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 1.6e-16 90.1 103 51.5
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 1.0e-15 87.4 103 50.5
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 1.3e-15 87.0 103 47.6
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 8.7e-15 84.3 103 48.5
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 1.9e-14 83.2 103 48.5
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.9e-14 83.2 105 47.6
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 2.5e-14 82.8 103 49.5
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 3.3e-14 82.4 103 48.5
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 5.7e-14 81.6 103 45.6
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 7.4e-14 81.3 103 46.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 7.4e-14 81.3 103 48.5
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 9.7e-14 80.9 103 46.6
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 1.3e-13 80.5 106 46.2
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 1.6e-13 80.1 103 47.6
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 2.8e-13 79.3 103 48.5
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 3.7e-13 79.0 104 41.3
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 8.2e-13 77.8 105 49.5
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 5.3e-12 75.1 104 48.1
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 9.0e-12 74.3 103 45.6
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.2e-11 73.9 110 45.5
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 1.5e-11 73.6 105 48.6
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 2.6e-11 72.8 106 48.1
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 2.9e-10 69.3 105 45.7
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 8.5e-10 67.8 102 44.1
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.4e-09 67.0 97 45.4
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 1.4e-09 67.0 105 42.9
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 1.9e-09 66.6 103 41.7
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 2.5e-09 66.2 111 41.4
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 2.5e-09 66.2 111 41.4
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 2.5e-09 66.2 111 41.4
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 3.2e-09 65.9 111 43.2
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 4.2e-09 65.5 108 41.7
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 4.2e-09 65.5 103 42.7
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 7.2e-09 64.7 103 43.7
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 7.2e-09 64.7 112 47.3
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 1.2e-08 63.9 105 40.0
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.4e-07 60.5 120 41.7
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 1.8e-07 60.1 59 57.6
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.1e-06 57.4 115 42.6
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 3.3e-06 55.8 98 44.9
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 4.3e-06 55.5 104 37.5
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 7.4e-06 54.7 104 37.5
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 7.4e-06 54.7 104 37.5
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 9.7e-06 54.3 107 36.4


User provided reference genes

Program Settings