Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.3e-241 839.3 422 100.0
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 6.0e-183 644.4 425 76.0
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.9e-174 615.1 428 74.5
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 4.3e-173 611.7 426 72.8
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.6e-172 608.6 426 72.8
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 3.6e-172 608.6 427 73.5
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 8.9e-171 604.0 427 72.6
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.0e-170 602.8 430 73.0
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.9e-169 599.0 430 72.8
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.3e-166 590.1 433 72.1
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.8e-164 582.4 428 71.5
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 1.3e-158 563.5 431 70.5
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 3.8e-153 545.4 426 66.0
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 5.6e-141 505.0 429 65.7
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 6.2e-140 501.5 435 64.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 5.8e-138 495.0 417 65.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 4.3e-133 478.8 360 70.6
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 1.2e-111 407.5 427 50.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.8e-110 403.7 430 49.8
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.9e-110 402.5 426 50.0
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 8.8e-110 401.4 427 48.9
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.5e-109 400.6 426 50.2
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 1.5e-109 400.6 425 50.1
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 3.7e-108 396.0 341 65.1
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 8.2e-108 394.8 428 48.1
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 1.4e-107 394.0 426 49.8
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.9e-105 386.3 422 49.3
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.7e-103 379.8 425 46.4
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 6.7e-102 375.2 423 46.8
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 8.8e-102 374.8 423 47.3
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 1.2e-101 374.4 426 48.4
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 3.3e-101 372.9 426 45.5
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 5.7e-101 372.1 438 46.1
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 1.3e-100 370.9 424 47.9
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 2.2e-100 370.2 424 45.8
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.1e-99 367.9 426 46.7
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 9.1e-99 364.8 426 46.2
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 2.0e-98 363.6 426 45.1
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 3.5e-98 362.8 426 45.3
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 3.8e-97 359.4 397 47.1
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 5.0e-97 359.0 376 49.5
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 5.0e-97 359.0 426 45.5
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 6.5e-97 358.6 423 46.1
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 9.4e-96 354.8 421 45.1
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.2e-95 354.4 425 44.2
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.6e-95 354.0 430 44.2
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.6e-95 354.0 426 44.6
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 3.6e-95 352.8 428 45.8
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 4.7e-95 352.4 377 47.2
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 8.0e-95 351.7 429 45.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.0e-94 351.3 424 45.5
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 3.0e-94 349.7 434 44.5
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 6.8e-94 348.6 425 43.5
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.5e-93 347.4 432 44.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 1.5e-93 347.4 425 44.0
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 4.4e-93 345.9 393 47.1
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 7.5e-93 345.1 425 45.4
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.3e-92 344.4 424 45.8
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 4.8e-92 342.4 418 43.3
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 1.4e-91 340.9 425 45.6
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 5.4e-91 339.0 426 46.0
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 7.0e-91 338.6 422 43.6
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-90 337.8 422 43.4
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.6e-90 337.4 398 46.7
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.0e-90 337.0 428 45.8
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.5e-90 335.9 428 45.6
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.9e-90 335.5 420 45.0
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.9e-89 333.2 407 46.9
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 2.9e-89 333.2 420 44.8
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 5.0e-89 332.4 423 45.6
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 6.6e-89 332.0 427 45.4
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-88 330.9 422 42.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.3e-88 329.7 423 44.0
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 4.2e-88 329.3 436 44.5
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 7.2e-88 328.6 399 44.6
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 2.1e-87 327.0 346 54.6
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.1e-87 327.0 421 42.3
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.8e-87 326.6 421 43.5
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 4.7e-87 325.9 421 43.7
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.4e-86 324.3 423 43.7
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 5.2e-86 322.4 423 43.5
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 6.8e-86 322.0 425 44.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.5e-85 320.9 428 41.8
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 2.0e-85 320.5 419 43.2
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.0e-85 320.5 376 45.7
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 2.0e-85 320.5 393 43.0
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 4.4e-85 319.3 419 43.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.4e-85 319.3 424 41.3
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.2e-84 317.0 400 45.5
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 3.7e-84 316.2 423 42.3
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-82 311.2 422 42.9
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.5e-82 309.3 422 42.4
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 6.6e-81 305.4 461 42.5
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.9e-80 303.9 367 44.7
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 3.3e-80 303.1 423 40.7
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 4.3e-80 302.8 465 42.2
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 6.1e-79 298.9 468 37.8
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-78 295.8 422 40.3
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.9e-78 295.0 413 43.6
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.6e-77 293.5 389 40.4
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.9e-76 290.0 425 45.4
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.9e-76 290.0 425 40.5
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 2.9e-76 290.0 399 40.1
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 1.9e-75 287.3 419 40.3
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 1.2e-74 284.6 419 40.3
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 1.8e-70 270.8 331 42.6
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 2.6e-69 266.9 410 39.5
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 7.5e-69 265.4 378 41.5
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 3.7e-68 263.1 423 37.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 6.4e-68 262.3 427 39.1
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.3e-65 253.8 428 35.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 3.9e-65 253.1 428 35.3
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 8.3e-60 235.3 378 36.2
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.6e-55 219.9 424 33.0
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.5e-53 214.5 359 35.4
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 7.6e-53 212.2 210 53.3
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.9e-44 183.7 392 31.6
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 1.4e-43 181.4 191 45.5
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.6e-42 177.9 442 29.2
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.5e-42 176.8 438 30.8
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.5e-40 171.4 292 40.1
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 9.6e-40 168.7 450 29.1
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.8e-39 167.2 153 56.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 3.6e-39 166.8 447 30.2
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.4e-38 164.9 455 30.8
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 5.3e-38 162.9 493 26.8
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 9.9e-37 158.7 213 41.8
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 2.4e-30 137.5 405 28.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.2e-29 135.2 437 29.1
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.1e-26 124.4 205 38.0
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.4e-22 110.9 235 31.9
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 3.1e-22 110.5 111 44.1
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 1.1e-19 102.1 209 36.8
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-19 100.5 279 29.7
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 2.6e-13 80.9 77 48.1
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 2.1e-10 71.2 76 43.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 4.6e-10 70.1 58 48.3
C08p48240 Brassica napus HOM05D005393 ORTHO05D006257 2.5e-08 64.3 58 63.8
BolC8t49084H Brassica oleracea HOM05D000013 ORTHO05D000011 2.8e-07 60.8 39 71.8
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-07 60.8 239 26.8
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.8e-07 60.8 59 54.2
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 4.1e-06 57.0 61 44.3


User provided reference genes

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