Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G3280 Aethionema arabicum HOM05D007301 ORTHO05D002389 4.6e-159 565.1 425 100.0
Thhalv10009480m.g Eutrema salsugineum HOM05D007301 ORTHO05D002389 6.0e-66 255.8 341 51.0
CARHR011720 Cardamine hirsuta HOM05D007301 ORTHO05D002389 7.8e-66 255.4 343 47.2
BcaB03g13255 Brassica carinata HOM05D007301 ORTHO05D002389 3.9e-65 253.1 324 46.6
C05p09660 Brassica napus HOM05D007301 ORTHO05D002389 1.9e-64 250.8 339 49.0
BolC5t29707H Brassica oleracea HOM05D007301 ORTHO05D002389 1.9e-64 250.8 339 49.0
AT1G11440 Arabidopsis thaliana HOM05D007301 ORTHO05D002389 4.3e-64 249.6 316 53.8
AL1G22530 Arabidopsis lyrata HOM05D007301 ORTHO05D002389 9.6e-64 248.4 341 46.6
BraA06t24007Z Brassica rapa HOM05D007301 ORTHO05D002389 1.3e-63 248.1 335 49.0
BcaC07g38666 Brassica carinata HOM05D007301 ORTHO05D002389 2.1e-63 247.3 325 46.2
BolC8t49099H Brassica oleracea HOM05D007301 ORTHO05D002389 2.1e-63 247.3 325 46.2
A06p08080 Brassica napus HOM05D007301 ORTHO05D002389 6.2e-63 245.7 331 49.2
Carub.0001s1106 Capsella rubella HOM05D007301 ORTHO05D002389 8.1e-63 245.4 316 54.4
C08p14500 Brassica napus HOM05D007301 ORTHO05D002389 8.7e-57 225.3 329 48.9
BcaC05g25022 Brassica carinata HOM05D007301 ORTHO05D002389 4.3e-56 223.0 336 46.7
Sp1g10080 Schrenkiella parvula HOM05D007301 ORTHO05D002389 5.6e-56 222.6 315 42.5
BraA08t35262Z Brassica rapa HOM05D007301 ORTHO05D002389 8.1e-55 218.8 325 46.8
A08p33460 Brassica napus HOM05D007301 ORTHO05D002389 3.8e-52 209.9 332 46.1
THA.LOC104809531 Tarenaya hassleriana HOM05D007301 ORTHO05D002389 8.7e-41 172.2 310 39.7
Ciclev10016236m.g Citrus clementina HOM05D007301 ORTHO05D002389 3.7e-23 113.6 286 32.2
Manes.16G015600 Manihot esculenta HOM05D007301 ORTHO05D002389 5.3e-22 109.8 287 30.3
arahy.Tifrunner.gnm1.ann1.1PF2AY Arachis hypogaea HOM05D007301 ORTHO05D002389 1.2e-21 108.6 298 40.6
Gohir.D06G126100 Gossypium hirsutum HOM05D007301 ORTHO05D002389 1.5e-21 108.2 298 30.9
Gorai.010G147000 Gossypium raimondii HOM05D007301 ORTHO05D002389 2.0e-21 107.8 298 30.9
ClCG03G005250 Citrullus lanatus HOM05D007301 ORTHO05D002389 4.5e-21 106.7 323 30.7
Ca_00213_v3 Cicer arietinum L. HOM05D007301 ORTHO05D002389 2.5e-19 100.9 316 36.7
Phvul.006G195200 Phaseolus vulgaris HOM05D007301 ORTHO05D002389 2.5e-19 100.9 303 33.7
MELO3C002521.2 Cucumis melo HOM05D007301 ORTHO05D002389 3.2e-19 100.5 308 30.5
FvH4_3g03190 Fragaria vesca HOM05D007301 ORTHO05D002389 3.2e-19 100.5 251 33.1
Cc02_g11930 Coffea canephora HOM05D007301 ORTHO05D002389 7.2e-19 99.4 291 29.2
Prupe.4G030800 Prunus persica HOM05D007301 ORTHO05D002389 7.2e-19 99.4 306 31.0
FAN21G3361 Fragaria x ananassa HOM05D007301 ORTHO05D002389 1.2e-18 98.6 242 33.1
Sc05g0008310 Simmondsia chinensis HOM05D007301 ORTHO05D002389 1.2e-18 98.6 319 32.9
Cfa000294 Carpinus fangiana HOM05D007301 ORTHO05D002389 2.1e-18 97.8 317 29.7
COL.COLO4_31668 Corchorus olitorius HOM05D000687 ORTHO05D002389 6.1e-18 96.3 239 31.0
MD05G1334500 Malus domestica HOM05D007301 ORTHO05D002389 2.3e-17 94.4 296 34.5
VMungo0540G0977 Vigna mungo HOM05D007301 ORTHO05D002389 3.9e-17 93.6 250 32.8
FAN25G3745 Fragaria x ananassa HOM05D007301 ORTHO05D002389 5.2e-17 93.2 244 32.8
Lalb_Chr15g0090181 Lupinus albus HOM05D007301 ORTHO05D002389 6.7e-17 92.8 244 30.3
TWI63G0057 Tripterygium wilfordii HOM05D007301 ORTHO05D002389 6.7e-17 92.8 321 28.3
Glyma.13G250000 Glycine max HOM05D007301 ORTHO05D002389 8.8e-17 92.4 310 29.4
TPR.G32659 Trifolium pratense HOM05D007301 ORTHO05D002389 1.5e-16 91.7 244 34.8
AUR62012556 Chenopodium quinoa HOM05D007301 ORTHO05D002389 3.3e-16 90.5 249 28.1
AUR62014643 Chenopodium quinoa HOM05D007301 ORTHO05D002389 3.3e-16 90.5 250 32.0
Lj6g0023608 Lotus japonicus HOM05D007301 ORTHO05D002389 3.3e-16 90.5 253 31.2
Haze_06650 Corylus avellana HOM05D007301 ORTHO05D002389 4.4e-16 90.1 318 29.9
Haze_06639 Corylus avellana HOM05D007301 ORTHO05D002389 7.4e-16 89.4 318 29.9
RcHm_v2.0_Chr5g0004821 Rosa chinensis HOM05D007301 ORTHO05D002389 9.7e-16 89.0 295 29.8
Atru.chr10.2091 Acer truncatum HOM05D007301 ORTHO05D002389 1.7e-15 88.2 226 29.6
Migut.M01248 Erythranthe guttata HOM05D007301 ORTHO05D002389 1.7e-15 88.2 256 34.8
Atru.chr10.2079 Acer truncatum HOM05D007301 ORTHO05D002389 2.8e-15 87.4 277 28.5
Glyma.15G064200 Glycine max HOM05D007301 ORTHO05D002389 2.8e-15 87.4 254 29.9
Cpa.g.sc871.4 Carica papaya HOM05D007301 ORTHO05D002389 1.8e-14 84.7 286 27.6
CANSAT56G1725 Cannabis sativa HOM05D007301 ORTHO05D002389 1.2e-13 82.0 309 28.8
Peaxi162Scf00931g00032 Petunia axillaris HOM05D007301 ORTHO05D002389 2.6e-13 80.9 322 26.7
PGSC0003DMG400021709 Solanum tuberosum HOM05D007301 ORTHO05D002389 2.6e-13 80.9 331 30.8
SGA_v2.0_scaffold7G03899 Striga asiatica HOM05D007301 ORTHO05D002389 2.6e-13 80.9 301 26.6
SalBow8G1107 Salvia bowleyana HOM05D007301 ORTHO05D002389 3.5e-13 80.5 295 29.2
CAN.G424.85 Capsicum annuum HOM05D007301 ORTHO05D002389 4.5e-13 80.1 336 33.3
Medtr2g010980 Medicago truncatula HOM05D007301 ORTHO05D002389 4.5e-13 80.1 241 29.5
Sed0025707 Sechium edule HOM05D007301 ORTHO05D002389 5.9e-13 79.7 290 29.3
Sopen02g024550 Solanum pennellii HOM05D007301 ORTHO05D002389 7.7e-13 79.3 251 33.5
EL10As6g23651 Beta vulgaris HOM05D007301 ORTHO05D002389 1.0e-12 79.0 304 28.0
Oeu050575.1 Olea europaea HOM05D007301 ORTHO05D002389 1.3e-12 78.6 319 25.4
Solyc02g079780.1 Solanum lycopersicum HOM05D007301 ORTHO05D002389 1.7e-12 78.2 324 30.2
Atru.chr10.2080 Acer truncatum HOM05D007301 ORTHO05D002389 2.2e-12 77.8 307 28.0
Psat1g210680 Pisum sativum HOM05D007301 ORTHO05D002389 2.9e-12 77.4 330 35.5
CiPaw.09G153900 Carya illinoinensis HOM05D007301 ORTHO05D002389 3.8e-12 77.0 85 44.7
Nitab4.5_0003045g0050 Nicotiana tabacum HOM05D007301 ORTHO05D002389 3.8e-12 77.0 306 25.2
Potri.011G032700 Populus trichocarpa HOM05D007301 ORTHO05D002389 5.0e-12 76.6 251 29.1
QL05p077842 Quercus lobata HOM05D007301 ORTHO05D002389 8.5e-12 75.9 327 25.7
Thecc.06G206100 Theobroma cacao HOM05D007301 ORTHO05D002389 8.5e-12 75.9 234 29.1
Duzib235G0854 Durio zibethinus HOM05D007301 ORTHO05D002389 3.2e-11 73.9 236 29.7
Ah.09g236990 Amaranthus hybridus HOM05D007301 ORTHO05D002389 7.2e-11 72.8 335 26.6
Aqoxy1G00617 Aquilegia oxysepala HOM05D007301 ORTHO05D002389 7.2e-11 72.8 250 31.6
Lsat_1_v5_gn_1_123940 Lactuca sativa HOM05D007301 ORTHO05D002389 2.7e-10 70.9 272 30.5
Eucgr.E03612 Eucalyptus grandis HOM05D007301 ORTHO05D002389 3.6e-10 70.5 320 24.4
PGR042G3055 Punica granatum HOM05D007301 ORTHO05D002389 3.6e-10 70.5 322 26.4
Gohir.A06G122000 Gossypium hirsutum HOM05D007301 ORTHO05D002389 3.0e-09 67.4 213 26.8
FAN25G1308 Fragaria x ananassa HOM05D007301 ORTHO05D002389 6.8e-09 66.2 72 47.2
FAN25G2682 Fragaria x ananassa HOM05D007301 ORTHO05D002389 6.8e-09 66.2 72 47.2
CsaV3_1G011450 Cucumis sativus L. HOM05D007301 ORTHO05D002389 2.0e-08 64.7 308 29.2
unitig_27.g25344 Utricularia gibba HOM05D007301 ORTHO05D002389 2.0e-08 64.7 284 26.1
PSO063G0660 Papaver somniferum HOM05D007301 ORTHO05D002389 3.4e-08 63.9 249 27.7
Ah.14g088560 Amaranthus hybridus HOM05D007301 ORTHO05D002389 7.5e-08 62.8 108 33.3
Nitab4.5_0000568g0190 Nicotiana tabacum HOM05D004339 ORTHO05D002389 1.7e-07 61.6 75 41.3
Haze_14501 Corylus avellana HOM05D004339 ORTHO05D002389 2.2e-07 61.2 35 77.1
Hma1.2p1_1191F.1_g265440 Hydrangea macrophylla HOM05D004339 ORTHO05D002389 4.8e-07 60.1 34 73.5
Solyc02g088260.3 Solanum lycopersicum HOM05D004339 ORTHO05D002389 4.8e-07 60.1 54 55.6
Sopen02g032940 Solanum pennellii HOM05D004339 ORTHO05D002389 4.8e-07 60.1 54 55.6
PGSC0003DMG400001431 Solanum tuberosum HOM05D004339 ORTHO05D002389 4.8e-07 60.1 54 55.6
TWI32G0780 Tripterygium wilfordii HOM05D004339 ORTHO05D002389 4.8e-07 60.1 34 79.4
PSO832G1637 Papaver somniferum HOM05D007301 ORTHO05D002389 6.3e-07 59.7 254 24.8
TAR623G0342 Trochodendron aralioides HOM05D007301 ORTHO05D002389 6.3e-07 59.7 251 31.5
CiPaw.03G023900 Carya illinoinensis HOM05D004339 ORTHO05D002389 1.1e-06 58.9 34 76.5
HanXRQChr14g0448551 Helianthus annuus HOM05D004339 ORTHO05D002389 1.1e-06 58.9 34 67.6
Hma1.2p1_0409F.1_g146740 Hydrangea macrophylla HOM05D004339 ORTHO05D002389 1.1e-06 58.9 34 73.5
Hund13187 Selenicereus undatus HOM05D004339 ORTHO05D002389 1.1e-06 58.9 34 70.6
Dinv11507 Davidia involucrata HOM05D004339 ORTHO05D002389 1.8e-06 58.2 34 70.6
Lju41A9G72 Lonicera japonica HOM05D004339 ORTHO05D002389 1.8e-06 58.2 34 73.5
GSVIVG01006515001 Vitis vinifera HOM05D007301 ORTHO05D002389 1.8e-06 58.2 234 26.1
Lsat_1_v5_gn_2_90061 Lactuca sativa HOM05D004339 ORTHO05D002389 2.4e-06 57.8 34 70.6
Nitab4.5_0000212g0100 Nicotiana tabacum HOM05D004339 ORTHO05D002389 2.4e-06 57.8 62 46.8
Nitab4.5_0001591g0190 Nicotiana tabacum HOM05D004339 ORTHO05D002389 2.4e-06 57.8 75 40.0
Potri.017G087200 Populus trichocarpa HOM05D004339 ORTHO05D002389 3.1e-06 57.4 82 39.0
vmacro18177 Vaccinium macrocarpon HOM05D004339 ORTHO05D002389 3.1e-06 57.4 34 70.6
CAN.G206.175 Capsicum annuum HOM05D004339 ORTHO05D002389 4.1e-06 57.0 54 53.7
ECA232G3508 Erigeron canadensis HOM05D004339 ORTHO05D002389 4.1e-06 57.0 33 66.7
HanXRQChr08g0232051 Helianthus annuus HOM05D007301 ORTHO05D002389 4.1e-06 57.0 106 37.7
Lju41A9T72 Lonicera japonica HOM05D004339 ORTHO05D002389 4.1e-06 57.0 78 42.3
Manes.02G048440 Manihot esculenta HOM05D004339 ORTHO05D002389 4.1e-06 57.0 36 72.2
HPP92_017447 Vanilla planifolia HOM05D004339 ORTHO05D002389 4.1e-06 57.0 29 75.9
Cfa007586 Carpinus fangiana HOM05D004339 ORTHO05D002389 5.3e-06 56.6 35 68.6
CiPaw.04G015000 Carya illinoinensis HOM05D004339 ORTHO05D002389 5.3e-06 56.6 36 72.2
Lalb_Chr21g0318581 Lupinus albus HOM05D004339 ORTHO05D002389 5.3e-06 56.6 29 75.9
PGSC0003DMG400025147 Solanum tuberosum HOM05D004339 ORTHO05D002389 5.3e-06 56.6 33 69.7
VMungo0464G1715 Vigna mungo HOM05D004339 ORTHO05D002389 5.3e-06 56.6 98 34.7
CSS0006568 Camellia sinensis var. sinensis HOM05D004339 ORTHO05D002389 7.0e-06 56.2 34 67.6
CSS0028300 Camellia sinensis var. sinensis HOM05D004339 ORTHO05D002389 7.0e-06 56.2 34 67.6
Nitab4.5_0010283g0040 Nicotiana tabacum HOM05D004339 ORTHO05D002389 7.0e-06 56.2 34 67.6
Potri.004G127400 Populus trichocarpa HOM05D004339 ORTHO05D002389 7.0e-06 56.2 34 67.6
DCAR_011081 Daucus carota HOM05D004339 ORTHO05D002389 9.1e-06 55.8 76 42.1
HanXRQChr09g0264261 Helianthus annuus HOM05D004339 ORTHO05D002389 9.1e-06 55.8 55 47.3
Manes.01G101300 Manihot esculenta HOM05D004339 ORTHO05D002389 9.1e-06 55.8 36 72.2
Sabra17G0077000 Salix brachista HOM05D004339 ORTHO05D002389 9.1e-06 55.8 34 70.6
Sc10g0003440 Simmondsia chinensis HOM05D004339 ORTHO05D002389 9.1e-06 55.8 33 69.7
Sopen02g016320 Solanum pennellii HOM05D004339 ORTHO05D002389 9.1e-06 55.8 71 39.4


User provided reference genes

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