Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.2e-158 563.1 286 100.0
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 6.4e-96 354.8 248 74.2
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 4.1e-95 352.1 249 72.3
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 4.6e-94 348.6 248 72.2
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 7.8e-94 347.8 249 72.3
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.3e-93 347.1 265 69.1
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.3e-93 346.3 265 68.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.9e-92 343.2 250 71.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.5e-92 342.8 250 71.2
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.3e-92 342.4 264 68.9
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 3.3e-92 342.4 248 71.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 8.1e-91 337.8 245 71.8
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.1e-90 337.4 248 70.6
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.4e-90 336.3 250 71.6
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 8.9e-90 334.3 246 72.0
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.1e-87 327.4 248 69.4
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.1e-87 327.4 248 69.4
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 9.3e-87 324.3 250 65.6
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.6e-83 312.4 249 67.5
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.2e-78 297.4 246 63.8
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.3e-77 293.9 249 64.3
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.4e-65 252.7 249 53.4
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.9e-63 246.9 234 53.8
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.5e-63 246.5 236 54.7
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.5e-63 246.5 236 55.1
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 5.5e-63 245.4 230 55.2
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.2e-62 244.2 249 51.8
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 6.0e-62 241.9 238 52.1
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 1.8e-61 240.4 249 49.4
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.0e-61 239.6 249 50.6
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.9e-61 239.2 239 50.2
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.7e-61 238.4 246 51.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.1e-60 237.7 232 53.0
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 3.3e-60 236.1 231 52.8
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 9.6e-60 234.6 234 50.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.3e-59 234.2 249 49.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.1e-59 233.4 247 51.0
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 2.1e-59 233.4 237 51.5
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.8e-59 233.0 249 51.4
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.7e-59 232.6 249 49.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.8e-59 232.3 247 50.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 4.1e-58 229.2 249 50.6
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 5.9e-57 225.3 251 45.8
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.7e-56 223.8 246 47.2
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 2.2e-56 223.4 238 48.7
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.0e-56 222.2 250 47.6
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 6.5e-56 221.9 252 47.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 1.1e-55 221.1 236 47.9
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.4e-55 220.7 237 47.3
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.9e-55 220.3 237 51.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.2e-54 217.6 234 49.6
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.6e-54 215.7 231 47.6
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.6e-54 215.7 244 48.0
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.3e-53 214.2 229 50.2
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.3e-53 214.2 249 48.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.3e-53 213.4 231 48.1
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 6.7e-53 211.8 230 49.6
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 8.7e-53 211.5 247 46.6
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.1e-52 211.1 249 47.8
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.9e-52 210.3 233 48.5
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 2.5e-52 209.9 231 48.1
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 3.3e-52 209.5 233 47.2
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 4.3e-52 209.1 236 47.0
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 4.3e-52 209.1 233 48.5
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 7.4e-52 208.4 233 46.4
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 9.7e-52 208.0 234 45.3
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 2.2e-51 206.8 213 50.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 2.2e-51 206.8 238 46.6
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 3.7e-51 206.1 233 48.1
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 6.3e-51 205.3 235 45.1
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 8.2e-51 204.9 219 49.3
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.4e-50 204.1 233 47.6
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.8e-50 203.8 247 47.8
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.8e-50 203.8 242 47.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.8e-50 203.8 221 49.3
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 2.4e-50 203.4 235 45.1
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.1e-50 202.6 253 45.8
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 6.9e-50 201.8 248 44.0
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 9.0e-50 201.4 234 48.3
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 9.0e-50 201.4 228 46.1
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.2e-49 201.1 232 44.4
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-49 200.7 220 45.9
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.5e-49 200.7 239 46.9
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.5e-49 200.7 233 46.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.0e-49 200.3 226 46.0
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.4e-49 199.5 229 45.4
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 4.5e-49 199.1 234 47.4
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.5e-49 199.1 231 45.5
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 5.9e-49 198.7 249 47.0
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.1e-47 194.5 234 46.2
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.4e-47 194.1 240 44.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.5e-47 193.4 242 42.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.5e-47 193.4 225 45.3
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.5e-47 193.4 239 43.5
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 3.2e-47 193.0 185 55.7
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.4e-47 191.4 226 44.7
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-46 191.0 229 46.7
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-46 191.0 229 46.7
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.6e-46 190.7 225 45.3
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.1e-46 190.3 237 47.7
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 4.6e-46 189.1 237 42.2
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 6.1e-46 188.7 210 47.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 6.1e-46 188.7 240 47.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 7.9e-46 188.3 248 41.1
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.0e-45 188.0 242 42.6
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.3e-45 186.8 227 44.1
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.3e-45 186.8 227 45.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 3.9e-45 186.0 224 46.4
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.6e-44 183.3 211 49.3
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.6e-44 183.3 211 49.3
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 7.4e-44 181.8 235 44.7
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.3e-43 181.0 238 42.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 3.7e-43 179.5 233 44.6
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 8.2e-43 178.3 224 45.1
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.4e-42 177.6 181 51.4
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.8e-42 177.2 228 43.4
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 3.1e-42 176.4 227 44.1
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.0e-41 173.7 215 42.8
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 6.5e-40 168.7 213 46.0
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 8.5e-40 168.3 249 43.4
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-39 167.9 230 43.0
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.1e-39 167.9 222 41.9
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.5e-39 166.8 160 56.2
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 3.2e-39 166.4 228 41.2
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 7.2e-39 165.2 208 40.9
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.4e-37 161.0 240 40.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.8e-37 160.6 190 47.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.8e-37 160.6 190 47.9
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.1e-36 157.9 205 45.4
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.3e-34 149.1 211 41.7
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.0e-33 147.1 228 37.7
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 2.0e-33 147.1 263 36.1
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.7e-33 145.2 180 43.9
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 3.8e-32 142.9 217 40.6
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 1.1e-26 124.8 181 42.5
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 5.9e-25 119.0 165 40.0
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.1e-23 114.8 112 53.6
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.5e-23 113.6 163 42.3
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 4.2e-23 112.8 240 32.9
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 2.8e-19 100.1 139 41.7
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.3e-19 99.0 100 53.0
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.0e-16 91.7 86 53.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.7e-16 90.9 249 28.9
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 5.5e-15 85.9 90 48.9
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.6e-14 84.3 87 54.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.1e-14 84.0 87 44.8
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 3.0e-13 80.1 94 40.4
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 4.0e-13 79.7 179 31.3
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 5.7e-12 75.9 132 35.6
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.1e-10 71.6 132 33.3
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.9e-07 60.8 47 63.8


User provided reference genes

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