Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 0.0e+00 1513.8 796 100.0
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 6.6e-308 1060.4 799 73.3
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.2e-304 1049.7 799 73.6
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 2.7e-301 1038.5 798 72.6
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 3.0e-300 1035.0 798 72.8
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.6e-290 1002.7 799 71.5
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 7.6e-288 993.8 799 70.6
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.5e-280 969.5 800 68.2
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.3e-276 956.4 800 68.1
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 2.7e-261 905.6 784 66.5
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 3.3e-259 898.7 749 67.7
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.2e-256 890.2 798 64.0
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 2.7e-221 772.7 634 68.8
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 3.2e-105 387.1 429 55.7
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 2.0e-94 351.3 824 35.9
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 5.0e-90 336.7 820 35.2
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 5.2e-87 326.6 815 34.2
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.7e-82 311.6 812 33.6
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 5.0e-82 310.1 861 32.1
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 9.5e-81 305.8 778 33.8
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 8.0e-80 302.8 792 33.1
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 6.8e-79 299.7 834 32.5
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 8.3e-77 292.7 865 31.9
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.1e-76 290.4 860 31.0
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 7.0e-76 289.7 858 30.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 4.6e-75 287.0 815 32.3
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 6.0e-75 286.6 876 31.5
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 3.0e-74 284.3 667 34.8
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 7.3e-73 279.6 780 33.2
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 3.7e-69 267.3 815 32.3
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.9e-69 266.9 815 32.0
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 7.0e-68 263.1 816 31.9
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.0e-66 259.2 831 31.5
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 6.6e-66 256.5 805 32.5
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 1.5e-65 255.4 797 32.0
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.4e-63 248.8 838 32.1
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.4e-63 248.8 857 31.4
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 2.6e-62 244.6 810 30.5
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 2.2e-61 241.5 851 29.7
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.1e-60 239.2 807 30.1
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.4e-60 238.8 833 31.1
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 1.9e-60 238.4 820 30.9
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 3.2e-60 237.7 822 31.8
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 5.4e-60 236.9 831 30.4
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.3e-58 231.5 787 30.5
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 3.0e-58 231.1 975 27.5
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 8.6e-58 229.6 382 43.5
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 1.5e-57 228.8 784 30.0
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 4.3e-57 227.3 756 31.9
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 1.2e-56 225.7 898 28.4
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.6e-56 225.3 821 30.6
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 1.8e-55 221.9 382 43.2
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.0e-55 220.7 895 28.3
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.6e-54 218.0 762 30.2
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.3e-53 215.7 847 30.3
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.7e-53 215.3 842 29.6
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.0e-50 206.1 882 28.3
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 2.3e-50 204.9 818 28.6
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 3.9e-50 204.1 819 28.7
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 4.3e-49 200.7 917 27.7
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.6e-49 200.3 882 28.8
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 5.6e-49 200.3 802 29.4
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 5.6e-49 200.3 822 28.3
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.6e-48 198.7 844 29.6
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.4e-47 195.7 858 28.3
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.1e-47 194.5 827 29.0
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.1e-47 194.5 824 27.8
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 5.3e-47 193.7 924 27.1
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 9.9e-46 189.5 817 27.2
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 3.2e-44 184.5 818 27.3
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 9.3e-44 183.0 834 27.8
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.3e-42 179.1 804 26.5
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 1.7e-42 178.7 830 28.0
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 5.1e-42 177.2 758 28.5
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.1e-41 176.0 872 27.1
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.9e-41 175.3 570 29.8
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.9e-41 175.3 817 27.4
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.5e-41 174.9 598 32.3
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 4.3e-41 174.1 865 25.5
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 9.6e-41 172.9 958 25.7
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 1.6e-40 172.2 818 27.4
BcaB02g09549 Brassica carinata HOM05D000603 ORTHO05D006412 3.6e-40 171.0 351 41.0
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 3.6e-40 171.0 222 53.2
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 3.6e-40 171.0 222 53.2
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 3.1e-39 167.9 825 26.9
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 2.2e-37 161.8 581 31.7
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.1e-36 159.5 883 26.2
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 1.4e-36 159.1 214 45.8
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 2.4e-36 158.3 189 56.1
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.1e-35 155.2 829 26.3
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.6e-35 154.1 945 25.9
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 6.0e-35 153.7 817 26.8
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 3.0e-34 151.4 804 27.6
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 5.1e-34 150.6 185 44.9
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.1e-33 149.4 800 26.6
AL6G38770 Arabidopsis lyrata HOM05D024724 ORTHO05D038645 1.9e-33 148.7 362 39.2
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 5.6e-33 147.1 902 25.6
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.6e-32 145.6 857 26.8
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 2.1e-32 145.2 822 26.3
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 5.3e-31 140.6 818 25.7
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 3.4e-30 137.9 818 25.3
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 3.4e-30 137.9 740 27.0
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.5e-30 137.5 616 30.2
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 6.0e-27 127.1 288 36.1
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.1e-25 122.9 836 26.3
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 4.3e-25 120.9 885 24.1
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 7.4e-25 120.2 444 29.1
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-24 119.0 167 39.5
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.8e-23 115.5 147 45.6
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.8e-23 115.5 670 25.2
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 6.9e-23 113.6 891 24.2
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 4.5e-22 110.9 130 43.1
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.3e-21 109.4 135 40.7
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 2.7e-19 101.7 884 23.0
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 3.5e-19 101.3 591 27.6
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.3e-18 98.6 99 52.5
BcaB02g09103 Brassica carinata HOM05D005434 ORTHO05D006412 3.0e-18 98.2 138 42.8
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 4.3e-17 94.4 106 46.2
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 5.7e-17 94.0 485 28.5
BcaC02g11600 Brassica carinata HOM05D024878 ORTHO05D039720 9.7e-17 93.2 180 41.7
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 8.2e-16 90.1 178 28.1
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.4e-15 89.4 592 25.5
BcaC02g12612 Brassica carinata HOM05D000603 ORTHO05D018684 2.6e-14 85.1 95 54.7
BolC4t21719H Brassica oleracea HOM05D000603 ORTHO05D018684 6.5e-13 80.5 74 58.1
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 3.0e-10 71.6 148 36.5
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 1.7e-08 65.9 205 26.3
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 8.2e-08 63.5 133 32.3
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 3.1e-07 61.6 163 23.3
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 3.4e-06 58.2 637 22.9
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 3.4e-06 58.2 68 45.6


User provided reference genes

Program Settings