Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 2.0e-197 692.2 345 100.0
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 1.4e-142 510.0 346 76.0
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 3.3e-139 498.8 345 73.9
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 4.0e-137 491.9 346 73.4
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 2.6e-136 489.2 346 72.3
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 1.2e-128 463.8 311 74.9
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 5.9e-128 461.5 346 70.2
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 1.9e-123 446.4 345 67.2
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 5.7e-123 444.9 345 67.0
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 9.7e-123 444.1 347 68.0
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 9.7e-123 444.1 347 68.0
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 1.8e-121 439.9 346 65.0
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 6.9e-121 438.0 347 66.0
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 9.4e-118 427.6 346 65.9
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 2.2e-114 416.4 345 60.3
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 9.1e-113 411.0 345 59.4
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 1.6e-109 400.2 345 59.7
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 2.1e-109 399.8 345 58.3
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 2.1e-109 399.8 357 56.9
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 4.7e-109 398.7 345 58.0
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 6.1e-109 398.3 345 58.3
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 7.9e-109 397.9 345 58.0
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 2.6e-107 392.9 345 56.8
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 3.3e-107 392.5 348 57.5
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 4.4e-107 392.1 345 57.1
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.2e-106 389.8 345 56.5
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.2e-106 389.8 345 56.5
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.1e-105 387.5 345 55.9
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 1.4e-105 387.1 345 55.7
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.1e-105 386.0 342 54.4
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 4.1e-105 385.6 345 55.4
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 1.6e-104 383.6 345 54.5
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 5.9e-104 381.7 345 57.4
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 2.9e-103 379.4 345 55.1
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 5.5e-102 375.2 345 54.5
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 5.5e-102 375.2 345 54.5
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 7.2e-102 374.8 345 53.0
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 7.2e-102 374.8 343 56.0
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 1.0e-100 370.9 346 53.2
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 1.4e-100 370.5 347 55.9
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 2.3e-100 369.8 345 54.8
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 3.0e-100 369.4 345 52.8
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 4.0e-100 369.0 345 54.5
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 8.8e-100 367.9 345 54.8
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 1.5e-99 367.1 345 54.2
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 7.5e-99 364.8 345 54.5
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 1.7e-98 363.6 296 61.1
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 6.3e-98 361.7 345 54.2
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 1.1e-97 360.9 345 53.9
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 1.1e-97 360.9 345 53.3
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 2.4e-97 359.8 350 53.4
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 3.1e-97 359.4 343 52.8
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 3.1e-97 359.4 345 54.8
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 4.1e-97 359.0 343 53.1
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 5.3e-97 358.6 344 52.3
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 7.0e-97 358.2 345 54.5
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 7.0e-97 358.2 345 54.5
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 7.0e-97 358.2 345 52.2
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 1.6e-96 357.1 342 53.5
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 1.6e-96 357.1 345 52.8
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 2.0e-96 356.7 345 54.5
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 2.0e-96 356.7 345 51.3
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 5.9e-96 355.1 345 52.8
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 7.7e-96 354.8 345 51.6
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 1.0e-95 354.4 349 53.6
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 1.3e-95 354.0 347 52.7
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 3.8e-95 352.4 345 53.0
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 1.9e-94 350.1 345 52.8
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 7.2e-94 348.2 331 53.5
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 6.1e-93 345.1 345 50.1
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 1.8e-92 343.6 346 54.0
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 1.8e-92 343.6 344 51.7
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 3.0e-92 342.8 316 54.4
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 3.0e-92 342.8 345 53.3
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 4.0e-92 342.4 344 55.2
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 8.8e-92 341.3 348 50.9
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 2.0e-91 340.1 342 49.7
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 2.4e-89 333.2 291 54.3
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 1.0e-87 327.8 347 52.2
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 6.5e-87 325.1 320 51.9
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.5e-86 323.9 348 49.4
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 1.9e-86 323.6 343 49.9
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 1.9e-86 323.6 345 49.9
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 2.5e-86 323.2 348 48.9
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 4.2e-86 322.4 345 48.1
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.5e-86 321.2 267 57.3
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 4.0e-84 315.8 295 52.5
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 2.6e-83 313.2 397 45.8
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 3.7e-82 309.3 352 48.0
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 9.2e-81 304.7 345 47.8
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 2.8e-77 293.1 337 50.1
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 8.0e-77 291.6 345 46.7
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 2.7e-72 276.6 268 52.6
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 5.6e-70 268.9 354 42.1
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 1.2e-69 267.7 351 41.3
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 3.1e-68 263.1 346 44.2
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 9.8e-67 258.1 354 39.5
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 1.3e-63 247.7 347 40.6
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 3.0e-63 246.5 270 47.8
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 8.6e-63 245.0 297 47.8
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 2.1e-61 240.4 351 39.6
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 4.1e-57 226.1 401 35.4
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 3.0e-55 219.9 398 34.9
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 8.1e-53 211.8 233 48.1
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 2.9e-50 203.4 282 44.3
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 4.9e-42 176.0 154 56.5
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.0e-39 168.3 154 51.9
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 6.9e-36 155.6 110 62.7
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 9.9e-35 151.8 327 30.9
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.2e-34 150.6 225 39.1
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 1.1e-33 148.3 148 50.0
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 1.2e-32 144.8 117 57.3
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.3e-31 140.6 148 48.6
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 2.5e-30 137.1 94 67.0
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 3.2e-25 120.2 134 47.0
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 7.1e-25 119.0 102 54.9
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.8e-23 114.4 76 73.7
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 2.1e-21 107.5 102 54.9
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 1.4e-17 94.7 154 39.6
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 5.7e-14 82.8 107 42.1
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 5.7e-14 82.8 61 60.7
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 2.2e-13 80.9 106 47.2
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 1.5e-11 74.7 116 36.2
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 4.5e-11 73.2 57 64.9
TAR629G2985 Trochodendron aralioides HOM05D002637 ORTHO05D008095 6.7e-07 59.3 49 51.0


User provided reference genes

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