Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 6.4e-91 337.4 173 100.0
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 2.5e-79 298.9 175 89.7
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 4.3e-79 298.1 175 89.1
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 4.8e-78 294.7 174 89.1
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 8.1e-78 293.9 175 88.0
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 2.0e-76 289.3 175 88.6
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.6e-76 288.9 174 87.4
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 4.4e-76 288.1 174 87.4
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 4.4e-76 288.1 174 87.4
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-75 285.8 174 86.8
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-74 283.5 173 86.1
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-74 282.7 174 86.2
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.5e-73 278.5 173 84.4
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.5e-73 278.5 173 84.4
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 4.6e-73 278.1 173 85.5
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 6.0e-73 277.7 173 84.4
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 4.8e-70 268.1 184 79.9
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 4.5e-68 261.5 178 80.9
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.5e-63 246.5 174 74.1
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.9e-63 246.1 178 73.0
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 5.6e-63 244.6 176 75.6
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 7.4e-63 244.2 175 73.7
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 9.6e-63 243.8 179 73.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.6e-62 243.0 173 74.6
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.7e-62 241.9 179 73.2
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.7e-62 241.9 179 74.9
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 6.2e-62 241.1 177 72.9
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 8.1e-62 240.7 174 71.3
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-61 240.4 173 77.5
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.1e-61 240.4 173 77.5
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 5.3e-61 238.0 173 74.6
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 6.9e-61 237.7 173 70.5
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 6.9e-61 237.7 174 74.1
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.5e-60 236.5 173 72.8
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 1.5e-60 236.5 173 69.9
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 4.5e-60 235.0 177 72.3
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 4.5e-60 235.0 179 72.1
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 7.6e-60 234.2 176 72.2
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 7.6e-60 234.2 177 68.9
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.0e-59 233.8 173 68.8
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.3e-59 233.4 177 73.4
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 2.2e-59 232.6 179 70.9
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.9e-59 232.3 180 70.6
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.8e-59 231.9 180 70.0
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 4.9e-59 231.5 177 67.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 6.5e-59 231.1 176 71.6
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 8.4e-59 230.7 176 70.5
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 8.4e-59 230.7 174 70.1
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.1e-58 230.3 181 70.2
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.1e-58 230.3 176 71.0
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.1e-58 230.3 173 68.2
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.1e-58 230.3 173 68.2
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.9e-58 229.6 178 69.7
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.9e-58 229.6 178 70.2
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 2.5e-58 229.2 176 69.3
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 3.2e-58 228.8 173 71.1
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 7.1e-58 227.6 177 70.6
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 9.3e-58 227.3 173 71.7
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.2e-57 226.9 180 68.3
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.6e-57 226.5 176 68.2
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.6e-57 226.5 173 71.7
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.1e-57 226.1 179 67.6
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.5e-57 225.3 187 67.9
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.0e-57 224.6 177 70.1
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 7.9e-57 224.2 182 67.0
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.0e-56 223.8 173 68.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.3e-56 223.4 173 69.4
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.3e-56 223.4 173 69.4
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.8e-56 223.0 173 65.3
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 2.3e-56 222.6 174 66.7
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 2.3e-56 222.6 144 85.4
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 2.3e-56 222.6 183 65.0
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 3.9e-56 221.9 172 67.4
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 5.1e-56 221.5 177 70.6
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 5.1e-56 221.5 175 66.9
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 5.1e-56 221.5 180 67.8
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 6.7e-56 221.1 177 66.1
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.7e-56 221.1 177 67.8
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 6.7e-56 221.1 180 68.3
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 6.7e-56 221.1 173 67.6
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.1e-55 220.3 175 69.7
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 1.1e-55 220.3 174 67.8
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.5e-55 219.9 174 68.4
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.9e-55 219.5 171 68.4
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.3e-55 218.8 177 69.5
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 7.4e-55 217.6 173 69.9
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 9.6e-55 217.2 144 84.0
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 9.6e-55 217.2 179 65.9
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.7e-54 215.3 177 67.8
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 4.8e-54 214.9 173 67.1
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 4.8e-54 214.9 180 63.9
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 6.2e-54 214.5 173 65.9
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.1e-53 213.8 173 68.2
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.4e-53 213.4 179 67.0
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.8e-53 213.0 173 64.7
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 3.1e-53 212.2 173 64.2
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 5.3e-53 211.5 173 65.3
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 5.3e-53 211.5 174 66.7
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 9.0e-53 210.7 177 66.7
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 1.2e-52 210.3 180 62.8
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 3.4e-52 208.8 177 63.8
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 4.5e-52 208.4 176 65.3
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 7.6e-52 207.6 180 63.9
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 7.6e-52 207.6 180 63.9
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.7e-51 206.5 179 63.1
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 2.2e-51 206.1 179 62.6
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.9e-51 205.7 174 63.8
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.1e-50 203.8 173 63.0
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 5.5e-50 201.4 177 61.0
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 7.1e-50 201.1 133 76.7
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 9.3e-50 200.7 177 63.3
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.8e-48 196.4 173 61.3
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.1e-47 193.7 185 62.7
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.9e-47 193.0 173 60.1
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 4.3e-47 191.8 173 60.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 7.4e-47 191.0 129 74.4
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 9.7e-47 190.7 185 59.5
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 8.5e-43 177.6 117 72.6
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 3.2e-42 175.6 113 74.3
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 3.2e-42 175.6 113 74.3
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 7.2e-42 174.5 147 66.7
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 5.7e-39 164.9 158 52.5
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 2.8e-38 162.5 151 62.3
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.7e-38 162.2 147 66.0
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 1.5e-36 156.8 145 62.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 3.8e-35 152.1 126 65.9
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 6.7e-32 141.4 82 75.6
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 1.5e-31 140.2 116 73.3
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.4e-31 138.7 74 90.5
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 1.3e-30 137.1 74 89.2
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.3e-30 137.1 72 91.7
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 4.8e-30 135.2 74 87.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 2.6e-28 129.4 133 64.7
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.0e-27 127.5 101 74.3
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.5e-26 123.6 154 45.5
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 4.4e-23 112.1 173 44.5
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 8.2e-22 107.8 74 73.0
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 4.1e-21 105.5 108 53.7
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.7e-19 100.1 97 54.6
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.5e-15 87.0 65 64.6
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 2.0e-15 86.7 99 50.5
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 3.4e-15 85.9 141 39.7
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.2e-14 83.2 113 50.4
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 9.1e-13 77.8 105 49.5
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 7.7e-12 74.7 113 48.7
BcaB04g20368 Brassica carinata HOM05D005188 ORTHO05D006153 9.4e-10 67.8 67 62.7
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 4.7e-09 65.5 30 93.3


User provided reference genes

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