Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 3.5e-127 458.4 243 100.0
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 9.3e-96 354.0 247 79.4
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 1.9e-93 346.3 245 78.4
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 9.6e-93 344.0 247 78.1
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 6.9e-91 337.8 248 76.2
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 5.8e-90 334.7 248 75.8
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 1.9e-88 329.7 248 74.2
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 3.0e-86 322.4 249 75.9
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 6.9e-83 311.2 248 73.0
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 1.2e-82 310.5 248 72.6
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 2.0e-82 309.7 248 72.6
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 2.6e-82 309.3 248 72.6
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 5.8e-82 308.1 248 72.6
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.5e-77 293.5 235 73.6
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.4e-75 286.2 242 70.7
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 6.9e-75 284.6 242 71.1
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 4.5e-74 282.0 237 70.0
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 7.6e-74 281.2 242 70.2
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.9e-72 276.6 242 69.4
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.9e-72 276.6 236 69.5
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-68 263.5 242 68.2
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 6.9e-67 258.1 242 64.9
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 3.1e-59 232.6 257 55.3
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.1e-56 224.2 263 56.3
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 3.2e-56 222.6 259 56.4
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.5e-53 213.8 262 54.2
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 4.4e-53 212.2 265 52.5
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 4.4e-53 212.2 261 53.6
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 9.7e-53 211.1 264 51.1
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 8.2e-52 208.0 259 51.4
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 1.4e-51 207.2 264 51.5
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.8e-51 206.8 262 50.4
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 2.4e-51 206.5 261 52.1
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 4.1e-51 205.7 270 50.0
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 5.3e-51 205.3 265 51.7
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 7.7e-50 201.4 273 52.0
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.7e-50 201.4 265 50.2
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 7.7e-50 201.4 265 50.2
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 1.7e-49 200.3 251 50.2
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 2.9e-49 199.5 270 49.6
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.9e-49 199.5 267 50.2
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 5.0e-49 198.7 265 50.2
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 6.5e-49 198.4 265 49.8
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 6.5e-49 198.4 181 66.9
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 8.5e-49 198.0 266 51.5
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 8.5e-49 198.0 199 61.3
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.1e-48 197.6 255 51.4
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.9e-48 196.8 276 47.8
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.9e-48 196.8 267 51.3
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.9e-48 196.8 258 51.2
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 5.5e-48 195.3 267 50.9
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.2e-47 194.1 256 50.8
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.2e-47 194.1 260 51.9
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.6e-47 193.7 267 48.7
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.1e-47 193.4 269 48.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 3.6e-47 192.6 251 49.0
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 6.1e-47 191.8 262 49.6
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 6.1e-47 191.8 265 49.4
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 8.0e-47 191.4 204 55.9
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 3.0e-46 189.5 266 49.6
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 3.9e-46 189.1 262 49.2
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 1.1e-45 187.6 264 49.6
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.1e-45 187.6 285 49.1
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.1e-45 187.6 269 49.8
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.5e-45 187.2 260 47.3
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 2.0e-45 186.8 267 48.3
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.7e-44 183.7 259 46.7
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.8e-44 183.0 214 51.4
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 4.8e-44 182.2 258 45.7
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 4.8e-44 182.2 261 49.0
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 1.4e-43 180.6 265 49.1
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.4e-43 179.9 262 48.1
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 2.4e-43 179.9 265 46.0
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 2.4e-43 179.9 258 47.7
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 3.1e-43 179.5 287 44.6
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 3.1e-43 179.5 273 46.9
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 4.1e-43 179.1 261 49.4
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.3e-43 178.7 255 47.8
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 7.0e-43 178.3 184 55.4
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 7.0e-43 178.3 256 47.7
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 9.1e-43 177.9 265 44.5
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 2.6e-42 176.4 260 46.2
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 4.5e-42 175.6 256 48.0
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 5.9e-42 175.3 273 47.3
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 5.9e-42 175.3 288 43.8
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.0e-41 174.5 277 46.6
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.7e-41 173.7 177 53.7
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.2e-41 173.3 258 45.7
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.5e-40 170.6 249 45.8
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 5.5e-40 168.7 271 46.9
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 9.4e-40 167.9 258 45.3
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.1e-39 166.8 257 46.7
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 2.1e-39 166.8 264 45.8
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 6.1e-39 165.2 286 45.1
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 8.0e-39 164.9 136 68.4
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 1.0e-38 164.5 267 45.7
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.0e-38 164.5 257 44.0
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.4e-38 164.1 257 44.7
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 1.8e-38 163.7 309 42.4
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.5e-37 160.6 257 43.6
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.7e-36 157.1 256 43.4
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.2e-36 156.8 138 61.6
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 6.3e-36 155.2 258 45.0
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 6.3e-36 155.2 138 60.9
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 1.1e-35 154.5 259 44.4
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.4e-35 154.1 246 44.7
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.4e-35 154.1 129 64.3
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 2.4e-35 153.3 136 63.2
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 3.5e-34 149.4 268 42.5
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 3.2e-32 142.9 250 43.2
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 9.4e-32 141.4 250 42.4
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.4e-30 137.5 222 42.8
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.8e-30 137.1 120 61.7
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 4.4e-29 132.5 266 40.2
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 1.3e-28 131.0 252 40.9
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 3.7e-28 129.4 71 87.3
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 6.3e-28 128.6 121 57.9
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.8e-27 127.1 256 39.1
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-25 120.6 90 77.8
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 2.3e-25 120.2 174 47.7
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 4.0e-22 109.4 141 55.3
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 4.9e-20 102.4 72 69.4
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 4.5e-18 95.9 170 44.7
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 2.3e-17 93.6 257 36.2
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 8.6e-17 91.7 171 43.3
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-15 87.4 170 42.9
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 2.1e-15 87.0 173 43.4
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 3.6e-15 86.3 197 36.0
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 4.7e-15 85.9 94 57.4
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 3.5e-10 69.7 246 29.3
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 7.8e-10 68.6 187 35.8
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.0e-09 68.2 188 33.0
BolC7t46413H Brassica oleracea HOM05D005104 ORTHO05D006614 3.9e-09 66.2 68 54.4
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 5.6e-08 62.4 146 41.1
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 6.8e-06 55.5 149 35.6


User provided reference genes

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