Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 5.2e-190 667.5 334 100.0
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 5.2e-174 614.4 334 89.8
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 2.0e-173 612.5 334 90.4
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 4.9e-172 607.8 334 89.2
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 4.9e-172 607.8 334 89.2
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 4.1e-171 604.7 330 88.8
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 4.1e-171 604.7 334 88.9
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 7.1e-171 604.0 334 88.6
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.2e-170 603.2 330 88.5
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 1.2e-170 603.2 334 88.0
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 1.2e-170 603.2 334 88.0
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 3.5e-170 601.7 334 88.0
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 4.6e-170 601.3 330 88.5
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 2.3e-169 599.0 329 89.1
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.3e-156 556.6 334 79.6
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 8.4e-156 553.9 327 83.2
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.2e-155 552.0 329 81.5
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 5.4e-155 551.2 329 81.5
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 9.3e-155 550.4 329 80.5
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.2e-154 550.1 329 81.5
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 6.6e-153 544.3 328 80.5
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.9e-152 542.7 328 80.2
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 9.6e-152 540.4 329 79.9
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 4.8e-151 538.1 328 79.6
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 1.8e-150 536.2 329 78.4
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 4.0e-150 535.0 332 77.1
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 5.3e-150 534.6 332 77.4
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.2e-149 533.5 334 78.4
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.6e-149 532.3 329 78.1
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 5.8e-149 531.2 330 76.7
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 7.6e-149 530.8 346 75.1
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 7.6e-149 530.8 330 76.7
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.3e-148 530.0 329 78.1
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 1.7e-148 529.6 329 77.2
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.7e-148 529.6 332 78.3
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.7e-148 529.6 329 78.4
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 2.2e-148 529.3 329 75.7
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 2.2e-148 529.3 329 77.2
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 4.9e-148 528.1 329 78.1
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 6.4e-148 527.7 329 78.1
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 2.4e-147 525.8 329 78.4
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 3.2e-147 525.4 325 77.5
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 4.2e-147 525.0 329 77.5
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 5.5e-147 524.6 331 74.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 7.1e-147 524.2 331 77.3
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 1.6e-146 523.1 334 73.4
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 2.7e-146 522.3 330 75.8
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 3.5e-146 521.9 334 76.0
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 3.5e-146 521.9 331 77.0
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 4.6e-146 521.5 331 76.1
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 6.0e-146 521.2 330 76.4
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 6.0e-146 521.2 329 76.3
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.3e-145 520.0 330 75.5
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.8e-145 519.6 333 75.7
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 2.3e-145 519.2 330 75.8
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 3.9e-145 518.5 329 74.2
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 5.1e-145 518.1 329 76.0
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 6.7e-145 517.7 332 75.9
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 8.7e-145 517.3 331 75.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 8.7e-145 517.3 328 76.2
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.1e-144 516.9 329 76.0
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 1.1e-144 516.9 329 76.0
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.1e-144 516.9 331 77.0
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.5e-144 516.5 331 75.8
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.9e-144 516.2 332 75.6
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 3.3e-144 515.4 313 78.3
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 3.3e-144 515.4 330 74.8
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 4.3e-144 515.0 329 75.7
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 4.3e-144 515.0 329 75.7
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 9.6e-144 513.8 329 76.6
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 9.6e-144 513.8 329 75.7
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 2.8e-143 512.3 330 73.9
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 6.2e-143 511.1 334 74.9
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 8.1e-143 510.8 331 75.5
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 5.3e-142 508.1 329 74.2
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 9.0e-142 507.3 328 72.9
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 3.4e-141 505.4 330 76.4
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.8e-141 504.6 329 74.5
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 4.9e-140 501.5 330 73.6
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 6.5e-140 501.1 324 75.3
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 8.4e-140 500.7 327 74.3
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 7.1e-139 497.7 402 64.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.2e-138 496.9 331 71.3
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 2.1e-138 496.1 330 73.3
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.0e-137 493.8 329 72.9
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 1.5e-136 490.0 325 70.8
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 4.8e-135 485.0 317 72.9
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.9e-134 481.1 360 66.7
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.9e-134 481.1 360 66.9
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.2e-133 480.3 329 71.7
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 3.4e-133 478.8 348 69.0
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.3e-132 476.9 328 70.1
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 1.8e-129 466.5 329 69.9
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 8.5e-124 447.6 329 67.8
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 1.3e-119 433.7 286 74.5
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 4.5e-117 425.2 327 63.3
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.9e-115 419.9 346 64.7
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 3.9e-113 412.1 329 62.3
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 2.6e-112 409.5 328 61.9
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 3.7e-111 405.6 353 60.1
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 6.3e-111 404.8 287 70.4
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.4e-110 403.7 330 60.9
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 1.8e-110 403.3 270 69.6
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 1.4e-105 387.1 334 59.9
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.1e-102 375.9 328 56.7
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.8e-100 369.0 328 56.4
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 6.1e-98 361.7 330 54.5
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-97 360.9 330 55.2
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-97 360.5 328 53.4
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 2.3e-97 359.8 328 53.7
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 1.5e-96 357.1 225 74.7
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-96 357.1 331 55.0
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-96 356.7 330 55.5
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-96 355.1 334 53.6
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.3e-95 354.0 223 75.8
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-94 350.9 331 54.7
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.8e-94 350.1 329 54.4
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-93 347.1 334 53.6
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-92 344.4 336 52.1
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-92 344.0 328 52.7
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 3.2e-91 339.3 334 53.0
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 4.2e-91 339.0 328 51.8
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.7e-90 335.5 328 54.0
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.5e-88 330.5 220 74.1
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 5.0e-84 315.5 329 50.2
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-81 307.8 328 48.5
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 1.8e-81 307.0 233 67.4
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-79 299.7 334 47.9
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 5.4e-78 295.4 326 47.2
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 5.9e-77 292.0 264 54.5
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-64 250.0 219 55.7
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 6.4e-63 245.4 148 79.7
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 3.1e-57 226.5 142 75.4
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.3e-55 221.1 140 75.7
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.4e-54 217.6 180 63.9
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.2e-53 214.5 173 64.2
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 2.1e-50 203.8 215 52.1
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-47 194.5 175 53.1
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 8.4e-47 191.8 194 49.0
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.1e-45 187.2 325 38.2
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 1.1e-43 181.4 129 64.3
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.4e-41 173.7 105 79.0
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 5.3e-41 172.6 136 66.9
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 3.3e-35 153.3 158 48.7
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 2.1e-34 150.6 361 31.9
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 1.5e-27 127.9 350 30.6
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.6e-26 124.4 340 29.1
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.4e-25 121.3 322 28.9
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 4.0e-25 119.8 79 74.7
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 5.3e-25 119.4 98 56.1
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 1.3e-23 114.8 293 31.1
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 7.1e-22 109.0 67 65.7
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.1e-18 97.4 366 26.8
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 3.7e-18 96.7 255 31.8
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.1e-17 93.2 59 81.4
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 2.6e-16 90.5 330 27.9
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 7.6e-16 89.0 73 64.4
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.1e-14 85.1 57 75.4
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.3e-14 82.0 45 80.0
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.6e-13 81.3 147 37.4
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 5.7e-11 72.8 47 70.2
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 7.4e-11 72.4 51 68.6
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 9.7e-11 72.0 48 70.8
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 4.8e-10 69.7 90 44.4
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.4e-09 67.4 153 32.7
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 2.4e-09 67.4 50 62.0
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 3.1e-09 67.0 46 67.4


User provided reference genes

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