Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 0.0e+00 1343.2 698 100.0
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 9.1e-213 744.2 757 58.4
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 7.2e-210 734.6 754 57.3
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 2.3e-208 729.6 756 57.7
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.9e-194 683.3 744 55.2
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 4.9e-190 668.7 732 55.5
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 1.2e-188 664.1 732 55.7
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 4.3e-186 655.6 732 54.9
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 4.3e-186 655.6 732 54.9
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 7.1e-181 638.3 715 54.8
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.6e-180 637.1 717 54.4
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 2.7e-180 636.3 720 54.2
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 2.3e-179 633.3 723 54.4
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.9e-174 616.3 719 53.5
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 6.4e-174 615.1 609 58.3
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.9e-173 613.6 721 53.7
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 3.0e-171 606.3 721 53.3
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.5e-151 540.8 726 46.7
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.2e-150 537.0 311 87.1
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 5.0e-126 456.1 629 44.8
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.4e-123 448.0 759 41.0
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.3e-123 447.2 444 52.9
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 7.4e-122 442.2 674 41.2
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 9.7e-122 441.8 645 42.0
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 8.2e-121 438.7 660 41.2
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 7.0e-120 435.6 383 57.2
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.2e-119 434.9 572 45.6
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 2.0e-119 434.1 376 59.0
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.3e-118 431.4 659 42.2
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 1.3e-118 431.4 417 54.4
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.7e-118 431.0 621 43.6
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 3.8e-118 429.9 707 40.9
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 6.5e-118 429.1 359 60.2
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 6.5e-118 429.1 352 64.8
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 8.5e-118 428.7 343 62.1
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.2e-117 426.8 469 48.6
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.2e-117 426.8 382 56.3
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 1.6e-116 424.5 449 52.6
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.1e-116 424.1 371 58.5
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.7e-116 422.9 469 48.6
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.7e-115 419.1 723 38.2
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 6.7e-115 419.1 444 52.3
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.1e-114 418.3 476 48.1
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 9.7e-114 415.2 760 37.4
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 8.2e-113 412.1 351 61.5
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.1e-112 411.8 346 60.1
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 2.4e-112 410.6 697 40.7
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 2.0e-111 407.5 572 43.0
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.0e-111 407.5 713 40.7
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 2.0e-111 407.5 707 39.9
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 3.5e-111 406.8 350 60.0
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 4.5e-111 406.4 742 40.2
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 4.5e-111 406.4 716 38.5
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.5e-111 406.4 712 38.1
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.7e-110 404.4 343 60.3
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.9e-109 401.0 449 49.2
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 9.4e-109 398.7 738 39.6
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.0e-107 395.2 412 52.2
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.8e-107 394.4 631 41.2
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 3.0e-107 393.7 343 58.6
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 3.0e-107 393.7 344 59.3
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 6.8e-107 392.5 456 50.2
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 1.5e-106 391.3 342 57.6
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.5e-106 391.3 483 48.0
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 1.5e-106 391.3 702 37.9
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.0e-106 391.0 345 57.4
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 2.0e-106 391.0 393 54.2
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 4.4e-106 389.8 349 58.2
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 5.7e-106 389.4 352 56.0
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 5.7e-106 389.4 539 43.4
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.3e-105 388.3 344 56.7
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.7e-105 387.9 310 61.9
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.8e-105 387.1 342 58.2
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 2.8e-105 387.1 369 52.8
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.1e-104 385.2 342 58.5
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.4e-104 384.8 691 37.3
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 4.1e-104 383.3 596 40.8
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 7.0e-104 382.5 662 38.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.2e-103 381.7 764 37.4
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 7.7e-103 379.0 342 56.1
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 3.8e-102 376.7 474 46.0
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 5.0e-102 376.3 527 47.8
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 6.5e-102 375.9 694 38.5
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 2.5e-101 374.0 411 51.3
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 3.2e-101 373.6 632 39.1
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 5.5e-101 372.9 741 37.4
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 1.2e-100 371.7 740 36.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 3.6e-100 370.2 726 37.5
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 8.0e-100 369.0 461 46.9
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.8e-99 367.9 343 55.1
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 7.5e-98 362.5 730 36.6
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 9.8e-98 362.1 734 36.6
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.4e-96 357.5 719 36.4
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 5.4e-96 356.3 329 53.5
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.0e-95 354.4 447 45.6
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.7e-95 354.0 447 45.6
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 1.3e-94 351.7 481 45.3
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 9.5e-93 345.5 745 35.4
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 1.6e-92 344.7 426 45.3
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 4.7e-92 343.2 346 51.2
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 3.0e-91 340.5 446 44.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 8.9e-91 339.0 312 55.8
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.0e-90 337.8 345 53.6
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 4.1e-88 330.1 462 42.9
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 4.6e-87 326.6 404 44.3
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 3.0e-86 323.9 317 53.0
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.8e-83 314.7 404 44.1
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 6.0e-79 299.7 247 61.9
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 7.3e-69 266.2 238 56.7
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 5.8e-66 256.5 211 61.6
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.9e-64 251.5 279 47.0
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 3.9e-62 243.8 207 58.5
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 5.2e-59 233.4 365 35.9
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 9.9e-58 229.2 255 43.9
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.6e-55 221.9 299 42.8
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.5e-50 205.3 323 40.2
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 2.6e-42 177.9 363 36.1
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 2.5e-32 144.8 307 34.5
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.2e-32 144.4 113 60.2
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 8.7e-30 136.3 117 58.1
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 7.4e-29 133.3 163 42.3
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 4.1e-27 127.5 135 49.6
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 6.5e-25 120.2 325 30.5
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 6.1e-23 113.6 84 61.9
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.3e-22 112.5 128 43.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 3.0e-22 111.3 153 36.6
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 8.2e-20 103.2 140 41.4
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 5.5e-16 90.5 180 30.6
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.0e-14 86.3 58 63.8
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.5e-13 82.4 76 50.0
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 6.3e-12 77.0 63 60.3
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 6.3e-12 77.0 63 60.3
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.8e-11 75.5 55 65.5
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.5e-10 72.4 72 52.8


User provided reference genes

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