Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 6.8e-173 610.5 302 100.0
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 7.1e-138 494.2 286 85.7
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 3.5e-137 491.9 292 86.0
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 1.3e-136 490.0 289 85.1
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 4.1e-133 478.4 291 84.5
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 1.5e-132 476.5 291 84.2
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 8.4e-131 470.7 282 85.1
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-130 469.9 294 84.4
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 4.6e-129 464.9 285 84.9
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.3e-128 463.4 291 83.5
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 2.3e-128 462.6 289 83.0
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 1.6e-126 456.4 290 82.8
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 2.6e-124 449.1 299 79.6
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 1.6e-121 439.9 288 78.1
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 1.1e-119 433.7 291 80.4
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 1.1e-119 433.7 290 80.0
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 1.1e-119 433.7 291 80.4
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 1.8e-117 426.4 293 75.8
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-116 423.7 289 78.9
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 1.2e-116 423.7 289 78.9
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 2.0e-116 422.9 305 71.5
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 1.7e-115 419.9 289 77.5
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 3.0e-112 409.1 281 77.6
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 2.0e-111 406.4 294 75.2
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 8.0e-105 384.4 260 78.8
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 6.7e-104 381.3 290 72.4
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-101 373.6 291 71.1
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 4.0e-96 355.5 208 85.6
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 4.4e-95 352.1 273 68.1
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 2.8e-94 349.4 277 67.9
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 4.8e-94 348.6 272 66.2
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 4.8e-94 348.6 280 64.6
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 1.4e-93 347.1 278 67.3
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 1.8e-93 346.7 209 80.4
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 4.1e-93 345.5 276 65.2
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 4.1e-93 345.5 287 63.8
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 5.4e-93 345.1 280 63.9
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 5.4e-93 345.1 277 65.0
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 7.0e-93 344.7 277 65.0
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 1.6e-92 343.6 280 65.4
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 2.0e-92 343.2 196 85.7
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 2.0e-92 343.2 285 63.9
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 2.7e-92 342.8 280 66.1
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 2.7e-92 342.8 290 63.4
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 4.5e-92 342.0 285 65.6
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 4.5e-92 342.0 278 63.7
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 5.9e-92 341.7 211 79.6
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 1.0e-91 340.9 285 63.9
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.0e-91 340.9 283 64.3
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 1.0e-91 340.9 205 80.0
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 1.0e-91 340.9 281 64.4
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 1.7e-91 340.1 271 66.4
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 6.5e-91 338.2 281 63.0
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 6.5e-91 338.2 292 62.0
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 8.5e-91 337.8 205 79.5
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 1.1e-90 337.4 196 82.1
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.1e-90 337.4 280 65.4
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.1e-90 337.4 280 65.0
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 1.5e-90 337.0 266 67.3
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 4.2e-90 335.5 200 81.5
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 4.2e-90 335.5 209 79.4
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 4.2e-90 335.5 197 81.7
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 4.2e-90 335.5 194 83.0
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 7.2e-90 334.7 192 84.9
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 1.2e-89 334.0 289 62.3
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 1.6e-89 333.6 272 65.4
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 1.6e-89 333.6 270 65.2
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 2.1e-89 333.2 184 88.0
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 2.7e-89 332.8 196 81.6
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 2.7e-89 332.8 192 83.9
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 3.6e-89 332.4 288 62.2
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 4.7e-89 332.0 197 81.2
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 6.1e-89 331.6 273 63.0
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 6.1e-89 331.6 189 84.7
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 8.0e-89 331.3 197 80.7
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 1.0e-88 330.9 225 74.2
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.4e-88 330.5 289 62.3
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 1.4e-88 330.5 209 78.0
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 1.4e-88 330.5 222 74.3
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 1.4e-88 330.5 193 82.9
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 3.0e-88 329.3 192 81.8
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 4.0e-88 328.9 318 57.9
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 5.2e-88 328.6 196 80.6
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 6.8e-88 328.2 197 82.7
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 1.2e-87 327.4 326 56.7
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 1.2e-87 327.4 194 82.5
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 4.4e-87 325.5 287 63.8
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 5.7e-87 325.1 194 81.4
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 7.5e-87 324.7 189 82.5
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 9.8e-87 324.3 312 57.7
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 1.7e-86 323.6 205 76.1
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 1.7e-86 323.6 269 63.9
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 6.3e-86 321.6 208 74.0
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 8.3e-86 321.2 196 78.6
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 4.1e-85 318.9 196 77.6
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 5.4e-85 318.5 226 71.7
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.6e-84 317.0 275 62.2
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 5.9e-84 315.1 274 63.5
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 7.7e-84 314.7 339 53.4
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 2.3e-83 313.2 285 59.3
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.9e-83 312.8 266 62.4
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.1e-82 310.8 308 57.1
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.5e-82 310.5 262 61.8
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 1.9e-82 310.1 181 81.8
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 3.3e-82 309.3 197 75.6
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 3.3e-82 309.3 180 82.8
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 7.2e-82 308.1 166 89.2
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 1.2e-81 307.4 220 68.2
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 2.1e-81 306.6 265 62.6
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 2.1e-81 306.6 189 81.5
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 3.6e-81 305.8 192 79.2
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 6.1e-81 305.1 264 62.1
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 3.0e-80 302.8 214 67.8
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 8.9e-80 301.2 179 78.2
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 2.9e-78 296.2 317 52.4
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 1.3e-75 287.3 180 75.6
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 6.6e-75 285.0 187 75.9
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 3.3e-74 282.7 178 78.1
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 3.3e-74 282.7 223 63.7
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 1.2e-73 280.8 254 59.8
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 1.6e-73 280.4 156 84.6
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 8.9e-72 274.6 146 89.0
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.7e-70 270.4 149 86.6
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 2.4e-69 266.5 187 72.7
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 3.0e-67 259.6 170 73.5
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.1e-66 257.7 188 65.4
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 1.4e-64 250.8 363 43.5
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 1.2e-63 247.7 192 68.8
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 4.9e-62 242.3 177 68.4
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 3.0e-59 233.0 175 61.7
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 1.9e-58 230.3 228 55.7
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 1.1e-56 224.6 229 53.3
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 8.9e-56 221.5 257 52.1
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 4.4e-55 219.2 131 83.2
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.4e-53 214.2 137 77.4
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 1.9e-53 213.8 134 78.4
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 1.9e-50 203.8 190 55.8
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 4.3e-50 202.6 145 72.4
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 1.7e-46 190.7 226 44.7
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 3.8e-46 189.5 149 71.8
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-45 187.6 150 68.0
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 6.6e-43 178.7 100 89.0
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 1.8e-40 170.6 136 66.2
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 5.3e-40 169.1 193 43.5
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 2.2e-38 163.7 196 54.1
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 2.5e-34 150.2 113 72.6
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 7.4e-34 148.7 166 48.8
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.1e-32 144.8 173 50.3
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.1e-32 144.8 173 50.3
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 1.7e-30 137.5 93 77.4
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 1.4e-29 134.4 77 84.4
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 5.5e-29 132.5 96 71.9
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 9.3e-29 131.7 105 73.3
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 1.6e-28 131.0 95 68.4
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 6.2e-25 119.0 67 88.1
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 5.8e-23 112.5 85 71.8
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 2.9e-22 110.2 108 62.0
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 4.9e-22 109.4 107 54.2
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.1e-21 108.2 168 41.1
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.2e-20 104.8 64 78.1
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.1e-20 104.0 106 56.6
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 3.9e-19 99.8 54 90.7
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 5.7e-18 95.9 63 73.0
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.1e-16 91.7 46 93.5
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 9.0e-16 88.6 47 89.4
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 9.0e-16 88.6 47 89.4
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 2.2e-14 84.0 53 79.2
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 3.9e-11 73.2 57 63.2
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 6.7e-11 72.4 69 60.9
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 1.1e-10 71.6 36 94.4


User provided reference genes

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