Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 4.3e-216 754.6 439 100.0
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.1e-144 517.3 427 68.4
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.3e-144 515.4 425 68.0
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 6.3e-143 511.5 431 68.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 2.0e-141 506.5 454 63.9
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.4e-136 488.0 429 69.7
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.3e-127 460.7 422 65.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-126 457.2 425 62.4
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 5.0e-124 448.7 431 61.5
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-123 447.2 372 66.4
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.5e-123 447.2 372 66.4
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.1e-115 421.0 437 56.3
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.6e-114 417.2 424 57.8
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.6e-114 416.0 374 62.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.7e-114 415.6 373 61.9
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.4e-113 414.1 437 55.4
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 6.8e-113 411.8 374 61.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.6e-112 409.8 377 65.8
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.0e-109 400.2 418 58.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.5e-109 399.4 426 55.2
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.0e-108 397.9 370 60.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.3e-108 396.7 374 59.6
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.8e-108 396.0 378 59.0
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.8e-108 396.0 378 59.0
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 8.6e-108 394.8 429 54.8
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-107 393.7 378 58.5
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.5e-107 393.3 373 61.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 2.5e-107 393.3 415 55.4
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 3.3e-107 392.9 387 57.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.2e-106 391.0 369 59.3
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 6.1e-106 388.7 404 55.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 8.0e-106 388.3 426 53.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.0e-106 388.3 378 57.9
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 5.2e-105 385.6 363 59.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.2e-104 384.4 432 51.4
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.2e-104 384.4 378 58.5
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.5e-104 384.0 438 56.2
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.0e-104 383.6 399 58.1
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.6e-104 383.3 372 59.7
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.7e-104 382.1 377 57.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 9.8e-104 381.3 433 56.1
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-103 380.9 424 55.0
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.3e-103 380.9 375 58.7
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.2e-103 380.2 375 60.3
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.3e-103 378.6 427 53.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-102 377.9 414 55.3
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.8e-102 377.1 375 60.5
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 3.2e-102 376.3 423 53.2
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.2e-102 376.3 407 54.8
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 4.1e-102 375.9 422 52.1
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.6e-101 374.0 440 51.6
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.6e-101 374.0 439 54.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 2.0e-101 373.6 372 59.9
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.0e-100 371.3 410 58.8
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 6.6e-100 368.6 367 56.1
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.5e-99 367.5 371 60.1
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.5e-99 366.7 463 49.2
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 3.3e-99 366.3 368 58.4
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 4.3e-99 365.9 443 51.2
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 7.3e-99 365.2 431 50.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 9.5e-99 364.8 431 50.6
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 9.5e-99 364.8 463 48.6
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 6.1e-98 362.1 433 52.0
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.0e-97 361.3 374 57.0
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.4e-97 360.9 383 58.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 5.2e-97 359.0 376 55.1
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 7.5e-96 355.1 425 55.1
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 5.4e-94 349.0 364 58.8
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.2e-94 348.2 378 54.2
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.6e-93 347.4 404 52.7
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.7e-92 344.0 382 53.7
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.3e-92 343.6 374 60.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.3e-92 343.6 374 60.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 3.0e-92 343.2 391 51.7
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 3.9e-92 342.8 382 53.1
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 5.0e-92 342.4 418 52.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.0e-92 342.4 381 53.3
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.5e-91 340.1 365 59.7
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.6e-91 339.0 382 52.1
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.2e-90 337.8 266 69.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.2e-90 337.8 381 52.8
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.6e-90 337.4 382 54.2
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 6.2e-90 335.5 367 54.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.8e-89 334.0 370 53.2
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.3e-89 333.6 377 54.4
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 3.1e-89 333.2 426 49.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 5.2e-89 332.4 427 50.6
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.2e-88 331.3 373 53.1
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.2e-88 331.3 444 50.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.5e-88 330.9 364 57.4
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.3e-87 327.8 374 58.3
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.9e-86 323.9 377 55.7
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.7e-85 320.1 335 55.8
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.7e-85 320.1 376 51.3
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 7.8e-85 318.5 389 49.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 2.3e-84 317.0 372 51.6
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.5e-83 313.5 349 51.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.5e-83 313.5 374 55.6
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 4.3e-83 312.8 377 51.2
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.3e-83 312.8 373 53.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.8e-82 310.1 373 52.0
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-81 307.8 319 58.6
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 4.4e-80 302.8 268 63.8
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 3.7e-79 299.7 394 52.8
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 4.9e-79 299.3 269 63.6
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 4.9e-79 299.3 375 51.5
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 8.3e-79 298.5 269 64.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.0e-76 291.6 382 47.1
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 8.6e-76 288.5 310 54.8
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.2e-74 284.6 384 49.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 6.2e-74 282.3 234 64.1
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 8.9e-73 278.5 321 52.3
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.7e-71 274.2 387 49.4
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-70 271.2 427 43.6
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.5e-67 260.4 287 56.1
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 6.9e-65 252.3 409 41.6
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.5e-64 251.1 314 48.7
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.9e-62 244.2 326 48.2
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.5e-61 240.0 302 50.7
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.0e-61 239.2 267 56.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 3.3e-59 233.4 438 40.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 7.3e-59 232.3 373 46.6
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 7.3e-59 232.3 260 52.7
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 8.4e-55 218.8 260 55.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 2.1e-53 214.2 212 55.7
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.6e-53 213.0 347 42.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.8e-52 211.1 407 41.3
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.3e-50 204.9 377 42.2
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.1e-50 204.1 263 53.6
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.9e-47 193.7 262 50.0
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.5e-47 192.6 187 58.8
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 7.9e-45 185.7 132 72.0
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.0e-44 183.7 260 44.6
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 5.1e-44 183.0 132 71.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.8e-42 176.4 164 67.1
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 4.1e-41 173.3 175 57.1
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 4.5e-40 169.9 161 61.5
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-39 168.3 168 60.1
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 3.7e-34 150.2 189 50.3
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.9e-31 140.6 384 33.6
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 3.3e-27 127.1 467 28.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 3.7e-26 123.6 134 53.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.5e-19 101.7 97 56.7
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-14 85.5 87 55.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 6.7e-12 76.3 208 37.5
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 4.1e-09 67.0 135 37.0
C01p32800 Brassica napus HOM05D005050 ORTHO05D023932 1.6e-08 65.1 58 53.4
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 2.9e-07 60.8 58 50.0
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.9e-07 60.8 37 73.0
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 4.2e-06 57.0 32 84.4


User provided reference genes

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